Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhythmic diel pattern of gene expression in maize

ABSTRACT: Here we studied the leaf transcriptome in maize,
throughout a cycle of 10 h darkness and 14 h light to look for rhythmic patterns
of gene expression.

ORGANISM(S): Zea mays

SUBMITTER: Maciej Jonczyk

PROVIDER: E-MEXP-3212 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Gene expression profiling in three inbred lines of maize affected by chilling treatment

Project description:We investigated chilling response of seedlings of three inbred maize lines: chilling tolerant S68911, chilling-sensitive S160 and moderate chilling-sensitive S50676. Kernels were germinated in wet sand in darkness at 25C. Seedlings were transferred to growth chamber (photoperiod 14/10h, temperature 24, light 250 umol quanta x m-2 x s-1), grown till the third-leaf stage and used in experiment. Chilling treatment started at the start of the dark period and lasted 38h (10h dark, 14h light,10h dark, 4h light). Growth conditions was as previously described but temperature was set to 14 (light/dark). At the same time control plants were grown as previously described. There were three biological replications of hybridization scheme.

2016-02-14 | E-MEXP-3508 | biostudies-arrayexpress

Diel changes of transcriptome in cold-treated maize

Project description:We investigated effect of severe cold to diurnal transcriptome changes in maize 3rd leaf. We used chilling-sensitive inbred line CM109. Kernels were germinated in wet sand in darkness at 25C. Seedlings were transferred to growth chamber (photoperiod 14/10h, temperature 24, light 250 umol quanta x m-2 x s-1). After full development of the third leaf (fully developed ligular region) plants were used for experiments. The experiment was begun at the start of the dark period (time zero), at which time a large sample (eight plants) was taken to serve as a reference in hybridizations. Half of the plants were transferred to cold chamber (day/night temperature 8/6°C, photoperiod 14/10 h, light 250 umol quanta•m-2•s-1) other half served as control (day/night temperature 24/22°C, other parameters was the same as for cold treatment). Further samples were taken after 200, 400, 600 (dark period) and 810, 1020, 1230, 1440 minutes (light period) of growth (total 24 hours). Each sample consisted of the middle part of the third leaf blade, pooled from three plants and frozen in liquid nitrogen. The experiment was replicated four times with two replications dye swapped.

2017-08-21 | E-MTAB-1252 | biostudies-arrayexpress

Global transcriptome profiling of sigH overexpression in L. sakei

Project description:Comparison of L. sakei overexpressing sigH and wild type strain

2012-01-01 | E-MEXP-3238 | biostudies-arrayexpress

nrb4 alleles

Project description:Plants of Arabidopsis thaliana (ecotype Col-0, nrb4-2 and nrb4-4) were grown in phytochambers in short day conditions during three weeks. Then, samples from different pots were mixed, and the RNA extracted.

2012-12-31 | E-MEXP-3602 | biostudies-arrayexpress

Transcription profiling of tomato - suberization of fruit stem scar tissue

Project description:Mature green fruits of the tomato (Solanum lycopersicum L.) cultivar MicroTom were investigated (fruit developmental category II). After harvest, fruits were immediately utilized or stored in darkness at 25 C until further processing. After 0, 1, 2 or 4 days of storage stem scar tissues of tomato fruits were excised with a scalpel to a depth of approximately 2 mm, immediately frozen in liquid nitrogen and stored at -80 C until use.

2009-06-09 | E-MEXP-2151 | biostudies-arrayexpress

Dissociation of Morphology and Transcriptional Program in Candida albicans tup1

Project description:comparison of wild type and tup1 mutant under two different pH conditions

2016-12-01 | E-MEXP-3631 | biostudies-arrayexpress

Transcription profiling of Arabidopis leaves treated with organic acids

Project description:Exogenous supply of citrate and malate to Arabidopsis leaves to monitor transcriptional changes resulting from these treatments.

2013-03-25 | E-MEXP-3110 | biostudies-arrayexpress

Antibody microarray profiling of pancreatic cancer using 12 urine samples

Project description:Antibody microarray based profiling of twelve urine samples. 3 healthy female 3 heatlhy male 3 female with pancreatic cancer 3 male with pancreatic cancer

2012-05-03 | E-MEXP-3006 | biostudies-arrayexpress

Transcriptional landscape modeling in Candida albicans defines a core filamentation response

Project description:comparison of. C.albicans grown on different pH and media over time

2013-01-30 | E-MEXP-3675 | biostudies-arrayexpress

Transcription profiling of mouse peripheral blood mononuclear cells and brain after maternal separation

Project description:We used a mouse maternal separation model, a well-known paradigm of early adversity, to test the hypothesis that transcriptional changes in peripheral blood mononuclear cells (PBMCs) are paralleled by specific gene expression changes in three brain regions that are involved in the stress response. Furthermore, we evaluated whether gene expression profiles of PBMCs could be used to predict stress-related animal behaviours.

2009-07-31 | E-MEXP-2101 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data