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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of mammary glands from wild type and Akt1 knock out lactating mice at day 9 after parturition

ABSTRACT: A comparison of gene expression in the mammary gland of lactating mice at day 9 after parturition between Akt -/- and wildtype individuals.

ORGANISM(S): Mus musculus

SUBMITTER: Douglas Stairs

PROVIDER: E-MEXP-891 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Isoform-specific requirement for Akt1 in the developmental regulation of cellular metabolism during lactation.

Boxer Robert B RB Stairs Douglas B DB Dugan Katherine D KD Notarfrancesco Kathleen L KL Portocarrero Carla P CP Keister Blaine A BA Belka George K GK Cho Han H Rathmell Jeffrey C JC Thompson Craig B CB Birnbaum Morris J MJ Chodosh Lewis A LA

Cell metabolism 20061201 6

The metabolic demands and synthetic capacity of the lactating mammary gland exceed that of any other tissue, thereby providing a useful paradigm for understanding the developmental regulation of cellular metabolism. By evaluating mice bearing targeted deletions in Akt1 or Akt2, we demonstrate that Akt1 is specifically required for lactating mice to synthesize sufficient quantities of milk to support their offspring. Whereas cellular proliferation, differentiation, and apoptosis are unaffected, l ...[more]

PMID: 17141631

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Transcription profiling of mammary glands from mice at day 18 of pregnancy and from lactating mice 9 days post parturition

Project description:An experiment to compare the gene expression between two stages of murine mammary gland development; day 18 of pregnancy and lactating mammary gland 9 days post parturition.

2006-12-31 | E-MEXP-892 | biostudies-arrayexpress

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Comparative transcriptome profiling of human epidermis keratinocyte stem cells (KSC) versus keratinocyte progenitors (KP)

Project description:To characterize the global transcriptome of human keratinocyte stem cells (KSC) and keratinocyte progenitors (KP), primary basal keratinocyte subpopulations enriched in quiescent stem cells [Itg-?6bright / Trf-Rdim] or in cycling progenitors [Itg-?6bright / Trf-Rbright] were purified by flow cytometry from human skin samples. Sorted keratinocytes were then seeded in culture plates and maintained in culture medium overnight (15 hours), and genome-wide transcriptome analysis of these two subpopulations was directly performed, in order to globally maintain the initial phenotypes. After RNA preparation, gene profiling was performed using oligonucleotide microarrays (26068 probes). LOWESS normalisation was applied. Keywords: epidermis, keratinocyte stem cells, progenitors, transcriptome, stemness Dye-swap hybridization were performed. Slides were scanned with a Genepix 4000 microarray scanner (Axon Instruments, Molecular devices, Sunnyvale, CA). For each hybridized spot, the Cy3 and Cy5 fluorescence values were obtained by using Genepix Pro 4.0 software (Axon Instruments) and were saved as a result file

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Project description:Recent studies have shown that the RNA binding protein Musashi 2 (Msi2) plays prominent roles during development and leukemia. Additionally, in embryonic stem cells (ESC) undergoing the early stages of differentiation, Msi2 has been shown to associate with Sox2, which is required for the self-renewal of ESC. These findings led us to examine the effects of Msi2 on the behavior of ESC. Using an shRNA sequence that targets Msi2 and a scrambled shRNA sequence, we determined that knockdown of Msi2 disrupts the self-renewal of ESC and promotes their differentiation. Collectively, our findings argue that Msi2 is required to support the self-renewal and pluripotency of ESC. We used microarrays to better understand global changes in ESC gene expression following the knockdown of the RNA-binding protein Msi2 as compared to control ESC expressing a scrambled shRNA. Mouse embryonic stem cells (D3) were treated with lentivirus engineered for the expression of a Msi2 targeting shRNA sequence or scrambled (control) shRNA sequence. Following selection for infected cells with puromycin, cells were subcultured at low density and allowed to grow for 4 days (see treatment protocol) before RNA was extracted. RNA was collected and analyzed one time for each of the two samples.

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2003-07-22 | GSE544 | GEO

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