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Transcription profiling by array of human prostate cancer stem cells

ABSTRACT: Comparison of gene expression profiles in CD133+ Vs alpha2integrin low cell populations from patients with prostate cancer versus patients with benign prostatic hyperplasia

ORGANISM(S): Homo sapiens

DISEASE(S): Benign Prostatic Hyperplasia

SUBMITTER: Richard Birnie

PROVIDER: E-MEXP-993 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Transcription profiling by array of human stromal cells cultured with or without 3D BPH-1 prostate epithelial cells

Project description:BPH-1 prostate epithelial cells when cultured in Matrigel form 3D acini which closely recapitulate the tissue architecture of the prostate. The presence of primary stroma increases epithelial adhesions and causes changes in morphology. To identify the stromal signals which control actin/cadherin dynamics in epithelial cells we performed a microarray analysis on the stroma using Affymetrix U133 plus 2.0 arrays. Primary stroma from 7 different patients were cultured with (PSE) or without (PS) 3D BPH-1 epithelial acini to determine the gene expression changes within the stroma. The RNA from the Primary epithelia and stromal cultures were used at passages 1 or 1-3, respectively.

2010-06-09 | E-MEXP-2657 | biostudies-arrayexpress

Transcription profiling of normal, tumor and pure stromal tissue samples from patients with prostate adenocarcinoma, together with 4 cell lines

Project description:We have used normal, tumoral and pure stromal whole tissue samples, and cells lines in order to identify new markers of prostate cancer. The normal, tumoral and stromal tissue were obtained from patients diagnosed with prostate adenocarcinoma.

2008-11-12 | E-MEXP-1331 | biostudies-arrayexpress

MicroRNA expression profile of primary prostate cancer stem cells as a source of biomarkers and therapeutic targets

Project description:MicroRNA (miRNA) expression profiles were generated from prostate epithelial sub-populations, enriched from patient-derived benign prostatic hyperplasia (BPH, n=5), Gleason 7 treatment naÃ¯ve prostate cancer (PCa, n=5) and castration-resistant prostate cancer (CRPC, n=3). Microarray expression was validated in an independent patient cohort (n=10). The analyses show that miRNA expression in epithelial sub-populations (e.g. stem cells) clustered together, irrespective of pathological status. We also discovered concordance between the miRNA expression profiles of unfractioned CRPCs, human embryonic stem cells (SCs), and prostate epithelial SCs (both, benign and malignant). miR-548c-3p was chosen as a candidate miRNA from this group to explore its utility as a CRPC biomarker and/or therapeutic target. Overexpression of miR-548c-3p was confirmed in cancer SCs (8-fold, p<0.05) and unfractionated CRPCs (1.8-fold, p<0.05). Enforced overexpression of miR-548c-3p in differentiated cells induced stem-like properties (p 0.01) and radioresistance (p<0.01). Re-analyses of published studies further revealed that miR-548c-3p is significantly overexpressed in CRPC (p<0.05) and is associated with poor recurrence-free survival (p<0.05), suggesting that miR-548c-3p is a functional biomarker for prostate cancer aggressiveness. Our results validate the prognostic and therapeutic relevance of miRNAs for advanced prostate cancer management, whilst demonstrating that resolving cell-type and differentiation-specific differences is essential to obtain clinical relevant miRNA expression profiles. There are 42 samples in total: 15 benign prostatic hyperplasia, 15 prostate cancers, 9 treatment-resistant prostate cancer. There are stem cells, transit amplifying cells and committed basal cells dissected from each sample. Three PrEC samples of each three cell types can be used as reference.

2016-07-03 | E-GEOD-59156 | biostudies-arrayexpress

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Transcription profiling of rat neural stem cells isolated from embryonic neocortex exposed to BMP4

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Transcription profiling of human primary prostate epithelial and stromal cells exposed to 4-methylsulphinylbutyl and 3-methylsulphinypropyl isothiocyanates

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2009-06-05 | E-MEXP-2034 | biostudies-arrayexpress

Transcription profiling of wild type and talA talB double knock out E. coli

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2009-06-01 | E-MEXP-1841 | biostudies-arrayexpress

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