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SWGS on paired cfDNA and tissue DNA from pediatric cancer patients

ABSTRACT: We performed shallow whole genome sequencing (WGS) on circulating free (cf)DNA extracted from plasma or cerebrospinal fluid (CSF), and shallow WGS on the tissue DNA extracted from the biopsy in order to evaluate the correlation between the two biomaterials. After library construction and sequencing (Hiseq3000 or Ion Proton), copy number variations were called with WisecondorX.

INSTRUMENT(S): Illumina HiSeq 3000

ORGANISM(S): Homo sapiens

SUBMITTER: Katleen De Preter

PROVIDER: E-MTAB-10548 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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