Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Whole genome TraDIS-Xpress assay to determine gene roles during growth of Escherichia coli in competition with Pseudomonas aeruginosa, in the presence or absence of glucose


ABSTRACT: The aim of the experiment was to assay every gene in the Escherichia coli genome to identify those that contribute to competition with Pseudomonas aeruginosa. A library of transposon-insertion mutants was grown overnight either alone or together with an equal starting number of P. aeruginosa cells. The experiment was also conducted in the presence or absence of glucose to interrogate the effect of a plentiful supply of carbon source. DNA sequencing was then used to reveal the locations of the transposons in every mutant. By comparing the numbers of each mutant between conditions, information can be gained about the relative fitness of that mutant under the conditions tested.

INSTRUMENT(S): NextSeq 500

ORGANISM(S): Escherichia coli K-12

SUBMITTER: Nicholas Thomson 

PROVIDER: E-MTAB-13391 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2022-06-09 | E-MTAB-11802 | biostudies-arrayexpress
2013-08-28 | E-GEOD-46210 | biostudies-arrayexpress
2022-11-12 | E-MTAB-12353 | biostudies-arrayexpress
2024-11-18 | E-MTAB-14476 | biostudies-arrayexpress
2023-08-31 | E-MTAB-13226 | biostudies-arrayexpress
2018-11-20 | PXD010200 | Pride
2016-03-01 | E-GEOD-55328 | biostudies-arrayexpress
2009-09-15 | E-GEOD-17712 | biostudies-arrayexpress
2024-10-14 | PXD056790 | Pride
2020-10-19 | E-MTAB-9305 | biostudies-arrayexpress