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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcriptome analysis of capelin (Mallotus villosus) liver slice culture exposed to benzo[a]pyrene

ABSTRACT: Capelin (Mallotus villosus) is one of the important fish species in the arctic marine foodweb that could be vulnerable to contaminant exposure from offshore petroleum related activities. The study was conducted to map transcriptome responses in capelin liver slice culture exposed to benzo[a]pyrene (BaP). BaP is a polyaromatic hydrocarbon (PAH) which is among the most toxic compounds found in crude oil. Ex vivo liver slices culture was performed under 10 µM BaP exposure for 72 h and transcriptome analysis (RNA-seq) analysis was performed to characterize de novo transcriptome of the liver and identify genes responding to BaP exposure.

INSTRUMENT(S): TruSeq RNA Sample Preparation protocol, Illumina NovaSeq 6000, -

ORGANISM(S): Mallotus villosus

SUBMITTER: Fekadu Yadetie

PROVIDER: E-MTAB-13934 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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