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Comprehensive transcriptomic dataset for early stage fruit development in woodland strawberry Fragaria vesca

ABSTRACT: Fragaria vesca, a diploid woodland strawberry with a small and sequenced genome, is an excellent model for studying fruit development. The strawberry fruit is unique in that the edible flesh is actually enlarged receptacle tissue. The true fruit are the numerous dry achenes dotting the receptacleM-^Rs surface. Auxin produced from the achene is essential for the receptacle fruit set, a paradigm for studying crosstalk between hormone signaling and development. To investigate the molecular mechanism underlying strawberry fruit set, next-generation sequencing was employed to profile early-stage fruit development with five fruit tissue types and five developmental stages from floral anthesis to enlarged fruits. This two-dimensional data set provides a systems-level view of molecular events with precise spatial and temporal resolution.

INSTRUMENT(S): Illumina Genome Analyzer II

ORGANISM(S): Fragaria vesca

SUBMITTER: Nadim Alkharouf

PROVIDER: E-MTAB-1902 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Genome-scale transcriptomic insights into early-stage fruit development in woodland strawberry Fragaria vesca.

Kang Chunying C Darwish Omar O Geretz Aviva A Shahan Rachel R Alkharouf Nadim N Liu Zhongchi Z

The Plant cell 20130628 6

Fragaria vesca, a diploid woodland strawberry with a small and sequenced genome, is an excellent model for studying fruit development. The strawberry fruit is unique in that the edible flesh is actually enlarged receptacle tissue. The true fruit are the numerous dry achenes dotting the receptacle's surface. Auxin produced from the achene is essential for the receptacle fruit set, a paradigm for studying crosstalk between hormone signaling and development. To investigate the molecular mechanism u ...[more]

PMID: 23898027

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