Unknown,Transcriptomics,Genomics,Proteomics

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Oryza sativa, Nipponbare RNA-Seq - Conserved Poaceae Specific Genes Project


ABSTRACT: Illumina RNA Sequencing (RNA-Seq) of Oryza sativa, Nipponbare for the Conserved Poaceae Specific Genes project. Authors: Robin Buell, Ning Jiang, Haining Lin, Rebecca Davidson, Malali Gowda, John Hamilton, Brieanne Vaillancourt

INSTRUMENT(S): Illumina Genome Analyzer IIx

ORGANISM(S): Oryza sativa Japonica Group

SUBMITTER: Robin Buell 

PROVIDER: E-MTAB-2039 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution.

Davidson Rebecca M RM   Gowda Malali M   Moghe Gaurav G   Lin Haining H   Vaillancourt Brieanne B   Shiu Shin-Han SH   Jiang Ning N   Robin Buell C C  

The Plant journal : for cell and molecular biology 20120605 3


The Poaceae family, also known as the grasses, includes agronomically important cereal crops such as rice, maize, sorghum, and wheat. Previous comparative studies have shown that much of the gene content is shared among the grasses; however, functional conservation of orthologous genes has yet to be explored. To gain an understanding of the genome-wide patterns of evolution of gene expression across reproductive tissues, we employed a sequence-based approach to compare analogous transcriptomes i  ...[more]

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