Browse
Submit Data
Databases
API
Help

Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

28 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Differentially expressed miRNAs in human cutaneous squamous cell carcinoma

ABSTRACT: To determine the differentially expressed miRNAs in human cutaneous squamous cell carcinoma biopsies versus normal skin samples using microarray analysis.

INSTRUMENT(S): ABI StepOne Plus

ORGANISM(S): Homo sapiens

SUBMITTER: Nathan Duncan

PROVIDER: E-MTAB-3409 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Epigenome analysis of cutaneous squamous cell carcinoma samples

Project description:Genome wide DNA methylation profiling in cutaneous squamous cell carcinoma. The Infinium MethylationEPIC BeadChips 850K has been used to interrogate DNA methylation changes. The cohort included 23 patients in total, with precursors of squamous cell carcinoma (actinic keratosis group) and with cSCC at different stages.

2019-12-12 | E-MTAB-8542 | biostudies-arrayexpress

COL11A1 mutations in cutaneous squamous cell carcinoma [WES]

Project description:Whole exome sequencing was used to identify frequent COL11A1 mutations in cutaneous squamous cell carcinoma (cSCC).

2021-07-23 | GSE179296 | GEO

Sequencing Analysis of Cutaneous Squamous Cell Carcinoma

Project description:Sequencing Analysis of Cutaneous Squamous Cell Carcinoma

| PRJNA259586 | ENA

AK144841 in Cutaneous Squamous Cell Carcinoma (cSCC)

Project description:AK144841 in Cutaneous Squamous Cell Carcinoma (cSCC)

| PRJNA352422 | ENA

Characterisation of the adhesome of patient-derived cutaneous squamous carcinoma cells

Project description:Interactions between cells and the extracellular matrix, mediated by integrin adhesion complexes (IACs), play key roles in cancer progression and metastasis. We report here systems-level changes in the adhesome during progression of a patient-derived cutaneous squamous cell carcinoma (cSCC). We found that the actin regulatory protein Mena is enriched in IACs in metastatic cSCC cells and is connected within a subnetwork of actin-binding proteins to the LINC complex component nesprin-2.

2023-03-25 | PXD021492 | Pride

Targeted sequencing of localized and metastatic cutaneous squamous cell carcinoma

Project description:We report sequencing of 10 localized and 10 metastatic cutaneous squamous cell carcinomas from human subjects. Sequencing was done on an oncology targeted gene mutation panel consisting of 76 genes.

2020-07-15 | GSE150727 | GEO

Long non-coding RNAs in cutaneous squamous cell carcinoma

Project description:The expression of lncRNAs in cutaneous squamous cell carcinoma (cSCC) were determined with a commercially available microarray (Arraystar Inc.,Rockville, Maryland USA). The Arraystar human lncRNA Microarray V3.0 containing 30,586 LncRNAs and 26,109 coding transcripts (mRNAs)

2016-04-13 | GSE74859 | GEO

Long non-coding RNAs in cutaneous squamous cell carcinoma

2016-04-13 | E-GEOD-74859 | biostudies-arrayexpress

Identifying differentially expressed miRNAs in cancer stem cells of laryngeal squamous carcinoma

Project description:To understanding the miRNA expression profiling of cancer stem cells of laryngeal squamous carcinoma, the total RNA of CD133+CD44+ laryngeal cancer stem cells (isolated from LSCC cell line TU-177, named TDP), CD133-CD44- cells (TDN) and parental TU-177 (unsorted TU-177 cells, named TPT) was extracted, followed by miRNA sequencing. Differentially expressed miRNAs were identified.

2018-10-27 | GSE106280 | GEO

The genomic landscape of cutaneous squamous cell carcinoma

Project description:The genomic landscape of cutaneous squamous cell carcinoma

| PRJNA386187 | ENA