Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Transcription profiling by array of Xenopus laevis embryos at 15 different stages

ABSTRACT: The experiment were perfomed as a part of our Vertebrate Evo-Devo project. The aim of the project is to compare transcription profiles of normal (unmanipulated, wild-type, whole embryo) vertebrate embryos. Total RNA was collected from wild type X.laevis whole embryos at 15 different stages (Stages:2, 5, 9, 11, 13, 17, 19, 21, 23, 26, 28, 31, 37/38, 43, 48), and hybridized to A-AFFY-163 Affymetrix Xenopus laevis Genome 2.0 Array. All the stages contains data from 2 biological replications. Each staged-samples consists of pooled total RNA from several whole embryos.

ORGANISM(S): Xenopus laevis

SUBMITTER: Naoki Irie 

PROVIDER: E-MTAB-369 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis.

Irie Naoki N   Kuratani Shigeru S  

Nature communications 20110101

One of the central issues in evolutionary developmental biology is how we can formulate the relationships between evolutionary and developmental processes. Two major models have been proposed: the 'funnel-like' model, in which the earliest embryo shows the most conserved morphological pattern, followed by diversifying later stages, and the 'hourglass' model, in which constraints are imposed to conserve organogenesis stages, which is called the phylotypic period. Here we perform a quantitative co  ...[more]

Similar Datasets

Transcriptomics [E-MTAB-369] Transcription profiling by array of Xenopus laevis embryos at 15 different stages
2011-04-05 | GSE28390 | GEO
Transcriptomics Transcription profiling by array of chicken embryos at 15 different stages
2011-08-01 | E-MTAB-366 | biostudies-arrayexpress
Transcriptomics [E-MTAB-366] Transcription profiling by array of chicken embryos at 15 different stages
2011-04-05 | GSE28388 | GEO
Transcriptomics [E-MTAB-368] Transcription profiling by array of mouse embryos at 8 different stages
2011-04-05 | GSE28389 | GEO
Transcriptomics [E-MTAB-366] Transcription profiling by array of chicken embryos at 15 different stages
2011-04-05 | E-GEOD-28388 | biostudies-arrayexpress
Transcriptomics Transcription profiling by array of mouse embryos at 8 different stages
2011-08-01 | E-MTAB-368 | biostudies-arrayexpress
Transcriptomics Developmental gene expression of Xenopus laevis J strain [stage]
2016-10-24 | E-GEOD-73430 | biostudies-arrayexpress
Transcriptomics Xenopus laevis embryos and animal caps: Control vs PouV morpholino
2013-11-12 | GSE47578 | GEO
Methylation profiling Single-base resolution methylome of Xenopus laevis embryos
2016-08-26 | GSE76247 | GEO
Transcriptomics Xenopus laevis embryos and animal caps: Control vs PouV morpholino
2013-11-12 | E-GEOD-47578 | biostudies-arrayexpress