Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

Global mRNA transcriptome analysis of wild type and Hfq mutant strains of Serratia marcescens by RNAseq


ABSTRACT: In order to identify changes in the global mRNA transcriptome caused by deletion of the RNA-binding protein Hfq in Serratia marcescens, total mRNA was isolated from wild type Serratia marcescens Db10 and an otherwise isogenic strain carrying an in-frame deletion of the hfq gene (SMDB11_4482) and analysed by RNAseq. Four independent biological replicates were sequenced for each strain using the Illumina HiSeq platform. The data was used to identify the nature and extent of changes in transcript level between the two strains and to inform on the role of Hfq in virulence of Serratia marcescens, an opportunist bacterial pathogen.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Serratia marcescens

SUBMITTER: Sarah Coulthurst 

PROVIDER: E-MTAB-4501 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Similar Datasets

2022-02-19 | GSE78185 | GEO
2018-05-30 | PXD005225 | Pride
2023-06-20 | GSE155648 | GEO
2021-06-01 | GSE151031 | GEO
2015-12-31 | E-GEOD-71320 | biostudies-arrayexpress
2020-12-31 | GSE144646 | GEO
2016-11-22 | GSE60504 | GEO
2012-03-21 | E-GEOD-36521 | biostudies-arrayexpress
| PRJEB65322 | ENA
| PRJNA454492 | ENA