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Transcriptome analysis during the shift from dark to blue light in Arabidopsis wild type Col-0 plants.

ABSTRACT: RNA-seq was performed in three-day-old wild-type Col-0 plants grown on filter paper in the dark that were exposed to blue light and harvested after one-hour exposure.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Minami Matsui

PROVIDER: E-MTAB-5188 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Next-generation sequencing of genomic DNA fragments bound to a transcription factor in vitro reveals its regulatory potential.

Kurihara Yukio Y Makita Yuko Y Kawashima Mika M Hamasaki Hidefumi H Yamamoto Yoshiharu Y YY Matsui Minami M

Genes 20141219 4

Several transcription factors (TFs) coordinate to regulate expression of specific genes at the transcriptional level. In Arabidopsis thaliana it is estimated that approximately 10% of all genes encode TFs or TF-like proteins. It is important to identify target genes that are directly regulated by TFs in order to understand the complete picture of a plant's transcriptome profile. Here, we investigate the role of the LONG HYPOCOTYL5 (HY5) transcription factor that acts as a regulator of photomorph ...[more]

PMID: 25534860

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