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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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RNA-seq analysis of the budding yeast prp45(1-169) strain (a scarless truncation)

ABSTRACT: Prp45 is a budding yeast NineTeen-Complex associated factor, which plays a role in pre-mRNA splicing. prp45(1-169) is a temperature-sensitive truncation allele expressing only the first 169 amino acids (the full-length protein consists of 379 amino acids). RNA-seq analysis was performed to determine changes in transcription and splicing in cells with prp45(1-169) allele prepared by the CRISPR/Cas9 method as a scarless truncation, i.e. with no tags and with preserved endogenous 3' UTR. Total RNA was isolated by combining phenol-chlorophorm extraction with MasterPure Yeast RNA Purification Kit (Epicentre). Ribodepletion, library preparation and sequencing were performed by BGI Genomics.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Martin Převorovský

PROVIDER: E-MTAB-5334 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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