Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

0

DNA sequencing of Arabidopsis thaliana wild-type and nrpd1-3 under control or heat stress

ABSTRACT: The intent of the experiment was to infer from DNA sequencing the occurrence of extra-chromosomal DNA from Arabidopsis thaliana's heat-activated LTR retrotransposon Onsen/COPIA78. For this, we performed Illumina 150 bp pair-end PCR-free DNA genome re-sequencing, in both wild-type Col-0 and RdDM mutant nrpd1-3 under control and heat stress.

INSTRUMENT(S): NextSeq 500

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Diego Sanchez 

PROVIDER: E-MTAB-5641 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

Json Xml
altmetric image

Publications

High-frequency recombination between members of an LTR retrotransposon family during transposition bursts.

Sanchez Diego H DH   Gaubert Hervé H   Drost Hajk-Georg HG   Zabet Nicolae Radu NR   Paszkowski Jerzy J  

Nature communications 20171103 1

Retrotransposons containing long terminal repeats (LTRs) form a substantial fraction of eukaryotic genomes. The timing of past transposition can be estimated by quantifying the accumulation of mutations in initially identical LTRs. This way, retrotransposons are divided into young, potentially mobile elements, and old that moved thousands or even millions of years ago. Both types are found within a single retrotransposon family and it is assumed that the old members will remain immobile and dege  ...[more]

Similar Datasets

Transcriptomics Transcriptomics of Arabidopsis thaliana nrpd1-3 and nrpd1-3 plant 2L under control or heat stress
2019-03-16 | E-MTAB-5884 | biostudies-arrayexpress
Transcriptomics Transcriptomics of Arabidopsis thaliana wild-type and nrpd1-3 under control or heat stress
2019-03-17 | E-MTAB-5643 | biostudies-arrayexpress
Genomics DNA sequencing of Arabidopsis thaliana nrpd1-3 background with novel insertions of LTR retrotransposon ONSEN/COPIA78.
2018-03-18 | E-MTAB-5883 | biostudies-arrayexpress
Transcriptomics Transcriptomics of Arabidopsis thaliana wild-type and epimutants under control or long-term heat stress
2023-09-01 | E-MTAB-10925 | biostudies-arrayexpress
Transcriptomics Transcriptome analysis upon oxidative stress treatment for wild-type and catalase2 knock-out mutants
2016-09-26 | E-MTAB-4758 | biostudies-arrayexpress
Transcriptomics ABA is required for plant acclimation to a combination of salt and heat stress
2016-10-24 | E-GEOD-72806 | biostudies-arrayexpress
Transcriptomics systemic signal
2013-09-08 | E-MEXP-3754 | biostudies-arrayexpress
Transcriptomics Ribosome footprinting upon oxidative stress treatment for wild-type and catalase2 knock-out mutants
2016-10-21 | E-MTAB-4757 | biostudies-arrayexpress
Transcriptomics Transcription profiling of Arabidopsis 3 week old plant leaves Overexpressing of TELOMERASE ACTIVATOR 1 (TAC1) vs controls
2008-06-14 | E-GEOD-5896 | biostudies-arrayexpress
Transcriptomics Gene expression in pif3 mutant under dark and in wt under Red 1h and Red 18h
2012-01-03 | E-GEOD-30030 | biostudies-arrayexpress