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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Methylation profiling of human normal somatic tissues, placenta, sperm and an immortalized cell line to identify tissue-specific differentially methylated regions

ABSTRACT: Genome-wide DNA methylation reference profiles of 13 normal somatic tissues, placenta, sperm and an immortalized cell line using the meDIP technique and a custom oligonucleotide array targetting the vast majority of annotated TSSs and non-promoter CGIs in the human genome.

ORGANISM(S): Homo sapiens

SUBMITTER: Paul Flicek

PROVIDER: E-TABM-445 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs).

Rakyan Vardhman K VK Down Thomas A TA Thorne Natalie P NP Flicek Paul P Kulesha Eugene E Gräf Stefan S Tomazou Eleni M EM Bäckdahl Liselotte L Johnson Nathan N Herberth Marlis M Howe Kevin L KL Jackson David K DK Miretti Marcos M MM Fiegler Heike H Marioni John C JC Birney Ewan E Hubbard Tim J P TJ Carter Nigel P NP Tavaré Simon S Beck Stephan S

Genome research 20080624 9

We report a novel resource (methylation profiles of DNA, or mPod) for human genome-wide tissue-specific DNA methylation profiles. mPod consists of three fully integrated parts, genome-wide DNA methylation reference profiles of 13 normal somatic tissues, placenta, sperm, and an immortalized cell line, a visualization tool that has been integrated with the Ensembl genome browser and a new algorithm for the analysis of immunoprecipitation-based DNA methylation profiles. We demonstrate the utility o ...[more]

PMID: 18577705

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2013-05-06 | E-GEOD-39996 | biostudies-arrayexpress

A genome-wide screen identifies silencers with distinct chromatin properties and mechanisms of repression

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