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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Transcription profiling of MCF7 (human mammary gland adenocarcinoma) cells deprived of serum for 30 hrs and vs non-deprived cells to test spike based normalization

ABSTRACT: MCF7 (human mammary gland adenocarcinoma) cells were deprived of serum for 30 hrs and were compared to non-deprived cells. External normalization controls were added in equal amounts to equivalent amounts of total RNA.

ORGANISM(S): Homo sapiens

SUBMITTER: Dik van Leenen

PROVIDER: E-UMCU-3 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Monitoring global messenger RNA changes in externally controlled microarray experiments.

van de Peppel Jeroen J Kemmeren Patrick P van Bakel Harm H Radonjic Marijana M van Leenen Dik D Holstege Frank C P FC

EMBO reports 20030401 4

Expression profiling is a universal tool, with a range of applications that benefit from the accurate determination of differential gene expression. To allow normalization using endogenous transcript levels, current microarray analyses assume that relatively few transcripts vary, or that any changes that occur are balanced. When normalization using endogenous genes is carried out, changes in expression levels are calculated relative to the behaviour of most of the transcripts. This does not refl ...[more]

PMID: 12671682

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