Dataset Information
Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing.
Ontology highlight
ABSTRACT: Objectives
Diospyros oleifera, one of the most economically important Diospyros species, is an ideal model for studying the fruit development of persimmon. While, the lack of whole-transcriptome has hindered the complex transcriptional regulation mechanisms of sugar and tannin during fruit development.Data description
We applied Oxford Nanopore Technologies to six developmental stage of fruit from D. oleifera for use in transcriptome sequencing. As a result of full-length transcriptome sequencing, 55.87 Gb of clean data were generated. After mapping onto the reference genome of D. oleifera, 51,588 full-length collapsing transcripts, including 2,727 new gene loci and 43,223 transcripts, were obtained. Comprehensively annotated, 38,086 of new transcripts were functional annotation, and 972 lncRNAs, 7,159 AS events were predicted. Here, we released the transcriptome database of D. oleifera at different stage of fruit development,which will provide a fundamention of to investigatethe transcript structure, variants and evolution of persimmon.
SUBMITTER: Xu Y
PROVIDER: S-EPMC10012491 | biostudies-literature | 2023 Mar
REPOSITORIES: biostudies-literature
Publications
Full-length transcriptome profiling for fruit development in Diospyros oleifera using nanopore sequencing.
BMC genomic data 20230313 1
<h4>Objectives</h4>Diospyros oleifera, one of the most economically important Diospyros species, is an ideal model for studying the fruit development of persimmon. While, the lack of whole-transcriptome has hindered the complex transcriptional regulation mechanisms of sugar and tannin during fruit development.<h4>Data description</h4>We applied Oxford Nanopore Technologies to six developmental stage of fruit from D. oleifera for use in transcriptome sequencing. As a result of full-length transcr ...[more]
