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Personalized RNA neoantigen vaccines stimulate T cells in pancreatic cancer.


ABSTRACT: Pancreatic ductal adenocarcinoma (PDAC) is lethal in 88% of patients1, yet harbours mutation-derived T cell neoantigens that are suitable for vaccines 2,3. Here in a phase I trial of adjuvant autogene cevumeran, an individualized neoantigen vaccine based on uridine mRNA-lipoplex nanoparticles, we synthesized mRNA neoantigen vaccines in real time from surgically resected PDAC tumours. After surgery, we sequentially administered atezolizumab (an anti-PD-L1 immunotherapy), autogene cevumeran (a maximum of 20 neoantigens per patient) and a modified version of a four-drug chemotherapy regimen (mFOLFIRINOX, comprising folinic acid, fluorouracil, irinotecan and oxaliplatin). The end points included vaccine-induced neoantigen-specific T cells by high-threshold assays, 18-month recurrence-free survival and oncologic feasibility. We treated 16 patients with atezolizumab and autogene cevumeran, then 15 patients with mFOLFIRINOX. Autogene cevumeran was administered within 3 days of benchmarked times, was tolerable and induced de novo high-magnitude neoantigen-specific T cells in 8 out of 16 patients, with half targeting more than one vaccine neoantigen. Using a new mathematical strategy to track T cell clones (CloneTrack) and functional assays, we found that vaccine-expanded T cells comprised up to 10% of all blood T cells, re-expanded with a vaccine booster and included long-lived polyfunctional neoantigen-specific effector CD8+ T cells. At 18-month median follow-up, patients with vaccine-expanded T cells (responders) had a longer median recurrence-free survival (not reached) compared with patients without vaccine-expanded T cells (non-responders; 13.4 months, P = 0.003). Differences in the immune fitness of the patients did not confound this correlation, as responders and non-responders mounted equivalent immunity to a concurrent unrelated mRNA vaccine against SARS-CoV-2. Thus, adjuvant atezolizumab, autogene cevumeran and mFOLFIRINOX induces substantial T cell activity that may correlate with delayed PDAC recurrence.

SUBMITTER: Rojas LA 

PROVIDER: S-EPMC10171177 | biostudies-literature | 2023 Jun

REPOSITORIES: biostudies-literature

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Personalized RNA neoantigen vaccines stimulate T cells in pancreatic cancer.

Rojas Luis A LA   Sethna Zachary Z   Soares Kevin C KC   Olcese Cristina C   Pang Nan N   Patterson Erin E   Lihm Jayon J   Ceglia Nicholas N   Guasp Pablo P   Chu Alexander A   Yu Rebecca R   Chandra Adrienne Kaya AK   Waters Theresa T   Ruan Jennifer J   Amisaki Masataka M   Zebboudj Abderezak A   Odgerel Zagaa Z   Payne George G   Derhovanessian Evelyna E   Müller Felicitas F   Rhee Ina I   Yadav Mahesh M   Dobrin Anton A   Sadelain Michel M   Łuksza Marta M   Cohen Noah N   Tang Laura L   Basturk Olca O   Gönen Mithat M   Katz Seth S   Do Richard Kinh RK   Epstein Andrew S AS   Momtaz Parisa P   Park Wungki W   Sugarman Ryan R   Varghese Anna M AM   Won Elizabeth E   Desai Avni A   Wei Alice C AC   D'Angelica Michael I MI   Kingham T Peter TP   Mellman Ira I   Merghoub Taha T   Wolchok Jedd D JD   Sahin Ugur U   Türeci Özlem Ö   Greenbaum Benjamin D BD   Jarnagin William R WR   Drebin Jeffrey J   O'Reilly Eileen M EM   Balachandran Vinod P VP  

Nature 20230510 7963


Pancreatic ductal adenocarcinoma (PDAC) is lethal in 88% of patients<sup>1</sup>, yet harbours mutation-derived T cell neoantigens that are suitable for vaccines <sup>2,3</sup>. Here in a phase I trial of adjuvant autogene cevumeran, an individualized neoantigen vaccine based on uridine mRNA-lipoplex nanoparticles, we synthesized mRNA neoantigen vaccines in real time from surgically resected PDAC tumours. After surgery, we sequentially administered atezolizumab (an anti-PD-L1 immunotherapy), aut  ...[more]

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