Dataset Information

COVID-19 monitoring with sparse sampling of sewered and non-sewered wastewater in urban and rural communities.

ABSTRACT: Equitable SARS-CoV-2 surveillance in low-resource communities lacking centralized sewers is critical as wastewater-based epidemiology (WBE) progresses. However, large-scale studies on SARS-CoV-2 detection in wastewater from low-and middle-income countries is limited because of economic and technical reasons. In this study, wastewater samples were collected twice a month from 186 urban and rural subdistricts in nine provinces of Thailand mostly having decentralized and non-sewered sanitation infrastructure and analyzed for SARS-CoV-2 RNA variants using allele-specific RT-qPCR. Wastewater SARS-CoV-2 RNA concentration was used to estimate the real-time incidence and time-varying effective reproduction number (R_e). Results showed an increase in SARS-CoV-2 RNA concentrations in wastewater from urban and rural areas 14-20 days earlier than infected individuals were officially reported. It also showed that community/food markets were "hot spots" for infected people. This approach offers an opportunity for early detection of transmission surges, allowing preparedness and potentially mitigating significant outbreaks at both spatial and temporal scales.

SUBMITTER: Wannigama DL

PROVIDER: S-EPMC10250052 | biostudies-literature | 2023 Jul

REPOSITORIES: biostudies-literature

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COVID-19 monitoring with sparse sampling of sewered and non-sewered wastewater in urban and rural communities.

Wannigama Dhammika Leshan DL Amarasiri Mohan M Hongsing Parichart P Hurst Cameron C Modchang Charin C Chadsuthi Sudarat S Anupong Suparinthon S Phattharapornjaroen Phatthranit P Rad S M Ali Hosseini AH Fernandez Stefan S Huang Angkana T AT Vatanaprasan Porames P Jay Dylan John DJ Saethang Thammakorn T Luk-In Sirirat S Storer Robin James RJ Ounjai Puey P Devanga Ragupathi Naveen Kumar NK Kanthawee Phitsanuruk P Sano Daisuke D Furukawa Takashi T Sei Kazunari K Leelahavanichkul Asada A Kanjanabuch Talerngsak T Hirankarn Nattiya N Higgins Paul G PG Kicic Anthony A Singer Andrew C AC Chatsuwan Tanittha T Trowsdale Sam S Abe Shuichi S McLellan Alexander D AD Ishikawa Hitoshi H

iScience 20230609 7

Equitable SARS-CoV-2 surveillance in low-resource communities lacking centralized sewers is critical as wastewater-based epidemiology (WBE) progresses. However, large-scale studies on SARS-CoV-2 detection in wastewater from low-and middle-income countries is limited because of economic and technical reasons. In this study, wastewater samples were collected twice a month from 186 urban and rural subdistricts in nine provinces of Thailand mostly having decentralized and non-sewered sanitation infr ...[more]

PMID: 37351501

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Project description:Wastewater monitoring is a valuable public health tool that can track a variety of health markers. The strong correlations between trends in wastewater viral concentrations and county-level COVID-19 case counts point to the ability of wastewater data to represent changes in a community's disease burden. However, studies are lacking on whether the populations sampled through wastewater monitoring represent the characteristics of the broader community and the implications on health equity. We conducted a geospatial analysis to examine the extent to which populations contributing to wastewater collected through the North Carolina Wastewater Monitoring Network as of June 2022 represent the broader countywide and statewide populations. After intersecting sewershed boundary polygons for 38 wastewater treatment plants across 18 counties with census block and tract polygons, we compared the demographics and social vulnerability of (1) people residing in monitored sewersheds with countywide and statewide populations, and (2) sewered residents, regardless of inclusion in wastewater monitoring, with unsewered residents. We flagged as meaningful any differences greater than +/- 5 percentage points or 5 percent (for categorical and continuous variables, respectively) and noted statistically significant differences (p < 0.05). We found that residents within monitored sewersheds largely resembled the broader community on most variables analyzed, with only a few exceptions. We also observed that when multiple sewersheds were monitored within a county, their combined service populations resembled the county population, although individual sewershed and county populations sometimes differed. When we contrasted sewered and unsewered populations within a given county, we found that sewered populations were more vulnerable than unsewered populations, suggesting that wastewater monitoring may fill in the data gaps needed to improve health equity. The approach we present here can be used to characterize sewershed populations nationwide to ensure that wastewater monitoring is implemented in a manner that informs equitable public health decision-making.

Project description:Atmospheric particulate matter (PM) is a recognized risk factor for the global burden of disease in human populations. We are presenting here the application of toxicogenomics in the evaluation of the toxic effects of organic content of atmospheric particle matter (PM), from urban and rural environments (city of Barcelona and village of La Pobla, NE Spain), using the developing zebrafish embryo. The main goal is to identify the metabolic pathways involved in the adverse effects observed in zebrafish embryos exposed to PM organic content from urban and rural environments, also allowing the selection of genes of interest that are differentially expressed. The relevance of particle size to the PM toxicity is also addressed. Indeed, the zebrafish embryos were exposed to PM of aerodynamic diameter larger than 7.2 Î¼m and smaller than 0.5 Î¼m (PM10 and PM0.5, respectively). PM0.5 concentrated biological and toxic activities linked to organic substances. Transcriptomic analyses showed strong induction of the AhR signalling pathway (a.k.a. dioxin-like activity) for embryos exposed to both rural and urban extracts, correlating with the concentrations of PAHs. Urban extracts, with strong contribution of traffic emissions, specifically de-regulated oxidative stress-related genes, as well as pancreatic and eye-lens specific genes, two organs known to be affected by air pollution in humans. Exposure to rural extracts, with high contribution of wood burning emissions, affected genes implicated in basic cellular functions, in agreement with their strong embryotoxicity. Extracts from rural and urban samples elicited both common and specific transcriptome responses, suggesting different potentially adverse outcomes depending on PM source and composition. The authors thank the financial support of the Spanish Ministry (project TEA-PARTICLE, grant number CGL2011-29621) and the Portuguese Foundation for Science and Technology for the doctoral grant of Sofia R. Mesquita (SFRH/BD/80710/2011) funded by the Program POPH-QREN through the Portuguese Ministry of Education and Science and the European Social Fund, and support through project PEst-C/MAR/LA0015/2013. The PM filter samples used in the present study were PM10 and PM0.5 from the urban site - total of 4 samples from 2 sampling months; and PM0.5 from the rural site - total of 2 samples from 2 sampling months (PM10 samples from the rural site were not tested due to their very low concentration in organic compounds, and insignificant biological activity, previously measured). Sampling occurred during the cold periods of the year 2012/2013. The organic fraction of PM samples was extracted by sonication using a mixture of dichloromethane:methanol. Then, the extracts were filtered, evaporated and re-dissolved in Dimethyl sulfoxide (DMSO). Zebrafish fertilized eggs were exposed to PM organic extracts (0.2% DMSO) from the urban and rural sites from 24 to 120h post-fertilization. Total RNA was isolated from whole embryos (pools of 20 individuals), using Trizol reagent protocol (Invitrogen Life Technologies, Carlsberg, CA). The microarray study was performed using the Agilent Two-colour D. rerio Oligo Microarray v3 platform, following the Agilent Microarray â?? Based Gene Expression Analysis protocol. Three biological replicates were performed for each PM sample and controls. Biological replicates, a technical replicate and a self-to-self, were simultaneously amplified and labelled using Cyanine 3 (Cy3) and Cyanine 5 (Cy5) dye. After cRNA purification (RNeasy Kit, Quiagen GmbH, Hilden, Germany), the cRNA concentration and labelling were quantified in the NanoDrop spectrophotometer, obtaining incorporation rates in the range of 15-20pmol of cyanide dye/Âµl cRNA and yield values > 0.825ug, as recommended. cRNA was fragmented and hybridized in 4x44K arrays, for 17h at 65oC. After the hybridization the array slides were washed, and immediately scanned using Microarray Scanner Agilent G2505C system. Data was extracted using Agilent Feature Extraction Software v10.5.1.1, and the quality of microarray data was evaluated using the Quality Control report provided by Agilent Software. Based on the microarray data analysis, 22 primers were selected and designed using Primer Express 2.0 software (Applied Biosystems, Foster City, CA). Genes were quantified by real-time PCR to validate the microarray data, and a subset of 13 genes were further selected by their robust behaviour in the validation assays, allowing to differentiate the toxic potential of PM from urban and rural sources.

Dataset Information

COVID-19 monitoring with sparse sampling of sewered and non-sewered wastewater in urban and rural communities.

Publications

COVID-19 monitoring with sparse sampling of sewered and non-sewered wastewater in urban and rural communities.

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