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Diversity-oriented synthesis encoded by deoxyoligonucleotides.


ABSTRACT: Diversity-oriented synthesis (DOS) is a powerful strategy to prepare molecules with underrepresented features in commercial screening collections, resulting in the elucidation of novel biological mechanisms. In parallel to the development of DOS, DNA-encoded libraries (DELs) have emerged as an effective, efficient screening strategy to identify protein binders. Despite recent advancements in this field, most DEL syntheses are limited by the presence of sensitive DNA-based constructs. Here, we describe the design, synthesis, and validation experiments performed for a 3.7 million-member DEL, generated using diverse skeleton architectures with varying exit vectors and derived from DOS, to achieve structural diversity beyond what is possible by varying appendages alone. We also show screening results for three diverse protein targets. We will make this DEL available to the academic scientific community to increase access to novel structural features and accelerate early-phase drug discovery.

SUBMITTER: Hudson L 

PROVIDER: S-EPMC10427684 | biostudies-literature | 2023 Aug

REPOSITORIES: biostudies-literature

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Diversity-oriented synthesis encoded by deoxyoligonucleotides.

Hudson Liam L   Mason Jeremy W JW   Westphal Matthias V MV   Richter Matthieu J R MJR   Thielman Jonathan R JR   Hua Bruce K BK   Gerry Christopher J CJ   Xia Guoqin G   Osswald Heather L HL   Knapp John M JM   Tan Zher Yin ZY   Kokkonda Praveen P   Tresco Ben I C BIC   Liu Shuang S   Reidenbach Andrew G AG   Lim Katherine S KS   Poirier Jennifer J   Capece John J   Bonazzi Simone S   Gampe Christian M CM   Smith Nichola J NJ   Bradner James E JE   Coley Connor W CW   Clemons Paul A PA   Melillo Bruno B   Hon C Suk-Yee CS   Ottl Johannes J   Dumelin Christoph E CE   Schaefer Jonas V JV   Faust Ann Marie E AME   Berst Frédéric F   Schreiber Stuart L SL   Zécri Frédéric J FJ   Briner Karin K  

Nature communications 20230815 1


Diversity-oriented synthesis (DOS) is a powerful strategy to prepare molecules with underrepresented features in commercial screening collections, resulting in the elucidation of novel biological mechanisms. In parallel to the development of DOS, DNA-encoded libraries (DELs) have emerged as an effective, efficient screening strategy to identify protein binders. Despite recent advancements in this field, most DEL syntheses are limited by the presence of sensitive DNA-based constructs. Here, we de  ...[more]

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