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The genomic and immune landscape of long-term survivors of high-grade serous ovarian cancer.


ABSTRACT: Fewer than half of all patients with advanced-stage high-grade serous ovarian cancers (HGSCs) survive more than five years after diagnosis, but those who have an exceptionally long survival could provide insights into tumor biology and therapeutic approaches. We analyzed 60 patients with advanced-stage HGSC who survived more than 10 years after diagnosis using whole-genome sequencing, transcriptome and methylome profiling of their primary tumor samples, comparing this data to 66 short- or moderate-term survivors. Tumors of long-term survivors were more likely to have multiple alterations in genes associated with DNA repair and more frequent somatic variants resulting in an increased predicted neoantigen load. Patients clustered into survival groups based on genomic and immune cell signatures, including three subsets of patients with BRCA1 alterations with distinctly different outcomes. Specific combinations of germline and somatic gene alterations, tumor cell phenotypes and differential immune responses appear to contribute to long-term survival in HGSC.

SUBMITTER: Garsed DW 

PROVIDER: S-EPMC10478425 | biostudies-literature | 2022 Dec

REPOSITORIES: biostudies-literature

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The genomic and immune landscape of long-term survivors of high-grade serous ovarian cancer.

Garsed Dale W DW   Pandey Ahwan A   Fereday Sian S   Kennedy Catherine J CJ   Takahashi Kazuaki K   Alsop Kathryn K   Hamilton Phineas T PT   Hendley Joy J   Chiew Yoke-Eng YE   Traficante Nadia N   Provan Pamela P   Ariyaratne Dinuka D   Au-Yeung George G   Bateman Nicholas W NW   Bowes Leanne L   Brand Alison A   Christie Elizabeth L EL   Cunningham Julie M JM   Friedlander Michael M   Grout Bronwyn B   Harnett Paul P   Hung Jillian J   McCauley Bryan B   McNally Orla O   Piskorz Anna M AM   Saner Flurina A M FAM   Vierkant Robert A RA   Wang Chen C   Winham Stacey J SJ   Pharoah Paul D P PDP   Brenton James D JD   Conrads Thomas P TP   Maxwell George L GL   Ramus Susan J SJ   Pearce Celeste Leigh CL   Pike Malcolm C MC   Nelson Brad H BH   Goode Ellen L EL   DeFazio Anna A   Bowtell David D L DDL  

Nature genetics 20221201 12


Fewer than half of all patients with advanced-stage high-grade serous ovarian cancers (HGSCs) survive more than five years after diagnosis, but those who have an exceptionally long survival could provide insights into tumor biology and therapeutic approaches. We analyzed 60 patients with advanced-stage HGSC who survived more than 10 years after diagnosis using whole-genome sequencing, transcriptome and methylome profiling of their primary tumor samples, comparing this data to 66 short- or modera  ...[more]

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