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Protein target highlights in CASP15: Analysis of models by structure providers.


ABSTRACT: We present an in-depth analysis of selected CASP15 targets, focusing on their biological and functional significance. The authors of the structures identify and discuss key protein features and evaluate how effectively these aspects were captured in the submitted predictions. While the overall ability to predict three-dimensional protein structures continues to impress, reproducing uncommon features not previously observed in experimental structures is still a challenge. Furthermore, instances with conformational flexibility and large multimeric complexes highlight the need for novel scoring strategies to better emphasize biologically relevant structural regions. Looking ahead, closer integration of computational and experimental techniques will play a key role in determining the next challenges to be unraveled in the field of structural molecular biology.

SUBMITTER: Alexander LT 

PROVIDER: S-EPMC10792529 | biostudies-literature | 2023 Dec

REPOSITORIES: biostudies-literature

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Protein target highlights in CASP15: Analysis of models by structure providers.

Alexander Leila T LT   Durairaj Janani J   Kryshtafovych Andriy A   Abriata Luciano A LA   Bayo Yusupha Y   Bhabha Gira G   Breyton Cécile C   Caulton Simon G SG   Chen James J   Degroux Séraphine S   Ekiert Damian C DC   Erlandsen Benedikte S BS   Freddolino Lydia L   Gilzer Dominic D   Greening Chris C   Grimes Jonathan M JM   Grinter Rhys R   Gurusaran Manickam M   Hartmann Marcus D MD   Hitchman Charlie J CJ   Keown Jeremy R JR   Kropp Ashleigh A   Kursula Petri P   Lovering Andrew L AL   Lemaitre Bruno B   Lia Andrea A   Liu Shiheng S   Logotheti Maria M   Lu Shuze S   Markússon Sigurbjörn S   Miller Mitchell D MD   Minasov George G   Niemann Hartmut H HH   Opazo Felipe F   Phillips George N GN   Davies Owen R OR   Rommelaere Samuel S   Rosas-Lemus Monica M   Roversi Pietro P   Satchell Karla K   Smith Nathan N   Wilson Mark A MA   Wu Kuan-Lin KL   Xia Xian X   Xiao Han H   Zhang Wenhua W   Zhou Z Hong ZH   Fidelis Krzysztof K   Topf Maya M   Moult John J   Schwede Torsten T  

Proteins 20230726 12


We present an in-depth analysis of selected CASP15 targets, focusing on their biological and functional significance. The authors of the structures identify and discuss key protein features and evaluate how effectively these aspects were captured in the submitted predictions. While the overall ability to predict three-dimensional protein structures continues to impress, reproducing uncommon features not previously observed in experimental structures is still a challenge. Furthermore, instances w  ...[more]

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