Dataset Information

DIAgui: a Shiny application to process the output from DIA-NN.

ABSTRACT:

Summary

DIAgui is an R package to simplify the processing of the report file from the DIA-NN software thanks to a Shiny application. It returns the quantification of either the precursors, the peptides, the proteins, or the genes thanks to the MaxLFQ algorithm. In addition, the latest version provides the Top3 and iBAQ quantification and the number of peptides used for the quantification. In the end, DIAgui produces ready-to-interpret files from the results of DIA mass spectrometry analysis and provides visualization and statistical tools that can be used in a user-friendly way.

Availability and implementation

Code and documentation are available on GitHub at https://github.com/marseille-proteomique/DIAgui. The package is written in R and also uses C++ code. A vignette shows its use in an R command line workflow.

SUBMITTER: Gerault MA

PROVIDER: S-EPMC10799745 | biostudies-literature | 2024

REPOSITORIES: biostudies-literature

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Publications

DIAgui: a Shiny application to process the output from DIA-NN.

Gerault Marc-Antoine MA Camoin Luc L Granjeaud Samuel S

Bioinformatics advances 20240113 1

<h4>Summary</h4>DIAgui is an R package to simplify the processing of the report file from the DIA-NN software thanks to a Shiny application. It returns the quantification of either the precursors, the peptides, the proteins, or the genes thanks to the MaxLFQ algorithm. In addition, the latest version provides the Top3 and iBAQ quantification and the number of peptides used for the quantification. In the end, DIAgui produces ready-to-interpret files from the results of DIA mass spectrometry analy ...[more]

PMID: 38249340

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Dataset Information

DIAgui: a Shiny application to process the output from DIA-NN.

Summary

Availability and implementation

Publications

DIAgui: a Shiny application to process the output from DIA-NN.

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