Browse
Submit Data
Databases
API
Help

Dataset Information

28 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Proton-mediated electron configuration change in high-spin iron(II) porphyrinates.

ABSTRACT: The synthesis, molecular structure, and electronic structure characterization of two five-coordinate high-spin imidazolate-ligated iron(II) porphyrinates are reported. Their electronic structure, as deduced from Mössbauer spectra obtained in strong magnetic fields, is distinctly different from that of the analogous imidazole-ligated species. The resulting electronic structure models are consistent with all observed differing features in the two classes.

SUBMITTER: Hu C

PROVIDER: S-EPMC1479300 | biostudies-literature | 2005 Nov

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Proton-mediated electron configuration change in high-spin iron(II) porphyrinates.

Hu Chuanjiang C Noll Bruce C BC Schulz Charles E CE Scheidt W Robert WR

Journal of the American Chemical Society 20051101 43

The synthesis, molecular structure, and electronic structure characterization of two five-coordinate high-spin imidazolate-ligated iron(II) porphyrinates are reported. Their electronic structure, as deduced from Mössbauer spectra obtained in strong magnetic fields, is distinctly different from that of the analogous imidazole-ligated species. The resulting electronic structure models are consistent with all observed differing features in the two classes. ...[more]

PMID: 16248628

Similar Datasets

Electronic configuration of five-coordinate high-spin pyrazole-ligated iron(II) porphyrinates.

Project description:Pyrazole, a neutral nitrogen ligand and an isomer of imidazole, has been used as a fifth ligand to prepare two new species, [Fe(TPP)(Hdmpz)] and [Fe(Tp-OCH(3)PP)(Hdmpz)] (Hdmpz = 3,5-dimethylpyrazole), the first structurally characterized examples of five-coordinate iron(II) porphyrinates with a nonimidazole neutral ligand. Both complexes are characterized by X-ray crystallography, and structures show common features for five-coordinate iron(II) species, such as an expanded porphyrinato core, large equatorial Fe-N(p) bond distances, and a significant out-of-plane displacement of the iron(II) atom. The Fe-N(pyrazole) and Fe-N(p) bond distances are similar to those in imidazole-ligated species. These suggest that the coordination abilities to iron(II) for imidazole and pyrazole are very similar even though pyrazole is less basic than imidazole. Mo?ssbauer studies reveal that [Fe(TPP)(Hdmpz)] has the same behavior as those of imidazole-ligated species, such as negative quadrupole splitting values and relative large asymmetry parameters. Both the structures and the Mo?ssbauer spectra suggest pyrazole-ligated five-coordinate iron(II) porphyrinates have the same electronic configuration as imidazole-ligated species.

| S-EPMC2993868 | biostudies-literature

Hydrogen bonding effects on the electronic configuration of five-coordinate high-spin iron(II) porphyrinates.

Project description:The characterization of a new five-coordinate derivative of (2-methylimidazole)(tetraphenylporphinato)iron(II) provides new and unique information about the effects of forming a hydrogen bond to the coordinated imidazole on the geometric and electronic structure of iron in these species. The complex studied has two crystallographically distinct iron sites; one site has an axial imidazole ligand modified by an external hydrogen bond, and the other site has an axial imidazole ligand with no external interactions. The iron atoms at the two sites have distinct geometric features, as revealed in their molecular structures, and distinct electronic structures, as shown by Mössbauer spectroscopy, although both are high spin (S = 2). The molecule with the external hydrogen bond has longer equatorial Fe-N(p) bonds, a larger displacement of the iron atom out of the porphyrin plane, and a shorter axial bond compared to its counterpart with no hydrogen bonding. The Mössbauer features are distinct for the two sites, with differing quadrupole splitting and isomer shift values and probably differing signs for the quadrupole splitting as shown by variable-temperature measurements in applied magnetic field. These features are consistent with a significant change in the nature of the doubly populated d orbital and are all in the direction of the dichotomy displayed by related imidazole and imidazolate species where deprotonation leads to major differences. The results points out the possible effects of strong hydrogen bonding in heme proteins.

| S-EPMC2538548 | biostudies-literature

Four-coordinate iron(II) porphyrinates: electronic configuration change by intermolecular interaction.

Project description:The syntheses and structures of three four-coordinate iron(II) porphyrinates are reported. The three derivatives are tetraarylporphyrin species, where the aryl is either phenyl, p-methylphenyl, or p-methoxyphenyl. One of these derivatives, that of tetraphenylporphyrin, Fe(TPP), is a new crystalline phase that is distinct from the earlier reported phase (Collman, J. P.; et al. J. Am. Chem. Soc. 1975, 97, 2676). This new phase of Fe(TPP) has a very saddled porphyrin core; the prior phase was ruffled. The iron atom has close interactions (approximately 3.10 A) with two pyrrole Cb-Cb bonds above and below the porphyrin plane. Mössbauer spectra and magnetic susceptibility measurements, different for the two phases, provide strong evidence that the two phases of Fe(TPP) have distinct electronic structures that originate from intermolecular interactions.

| S-EPMC2515358 | biostudies-literature

Electronic configuration assignment and the importance of low-lying excited states in high-spin imidazole-ligated iron(II) porphyrinates.

Project description:The synthesis and characterization of six new high-spin deoxymyoglobin models (imidazole(tetraarylporphyrinato)iron(II)) are described. These have been intensively studied by temperature-dependent Mossbauer spectroscopy from 295 to 4.2 K. All complexes show a strong temperature dependence for the quadrupole splitting consistent with low-lying excited states of the same or lower multiplicity. An analysis of the data obtained in applied magnetic fields leads to the assignment of the sign of the quadrupole splitting. All model compounds as well as those of deoxymyoglobin and deoxyhemoglobin, previously studied, have a negative sign for the quadrupole splitting. Although not previously predicted, this experimental observation leads to the assignment of the ground-state electronic configuration for all high-spin imidazole-ligated iron(II) porphyrinates as (d(xz)())(2)(d(yz)())(1)(d(xy)())(1)(d(z)()()2)(1)(d(x)()()2(-)(y)()()2)(1). This is a distinctly different ground-state electronic configuration from other high-spin iron(II) porphyrinates; differences in structural details for the two classes of high-spin complexes are also discussed. The apparent anomaly of differing signs for the zero-field splitting constant between previously studied model complexes and the heme proteins is addressed; the difference appears to result from the fact that the assumptions used in the spin Hamiltonian approach that has been applied to these complexes are not adequately satisfied. Structures of four of the new five-coordinate species have been determined. Core conformations in these derivatives show variation, but these and previously studied compounds reveal a limited number of conformational patterns. The bond lengths and other geometrical parameters such as porphyrin core size and iron out-of-plane displacement support a high-spin state assignment for the iron(II).

| S-EPMC1552104 | biostudies-literature

Just a proton: distinguishing the two electronic states of five-coordinate high-spin iron(II) porphyrinates with imidazole/ate coordination.

Project description:We report detailed studies on two S = 2 electronic states of high-spin iron(II) porphyrinates. These two states are exemplified by the five-coordinate derivatives with either neutral imidazole or anionic imidazolate as the axial ligand. The application of several physical methods all demonstrate distinctive differences between the two states. These include characteristic molecular structure differences, Mossbauer spectra, magnetic circular dichroism spectroscopy, and integer-spin EPR spectral distinctions. These distinctions are supported by DFT calculations. The two states are characterized by very different spatial properties of the doubly occupied orbital of the high-spin that are consonant with the physical properties.

| S-EPMC2846462 | biostudies-literature

Effects of imidazole deprotonation on vibrational spectra of high-spin iron(II) porphyrinates.

Project description:The effects of the deprotonation of coordinated imidazole on the vibrational dynamics of five-coordinate high-spin iron(II) porphyrinates have been investigated using nuclear resonance vibrational spectroscopy. Two complexes have been studied in detail with both powder and oriented single-crystal measurements. Changes in the vibrational spectra are clearly related to structural differences in the molecular structures that occur when imidazole is deprotonated. Most modes involving the simultaneous motion of iron and imidazolate are unresolved, but the one mode that is resolved is found at higher frequency in the imidazolates. These out-of-plane results are in accord with earlier resonance Raman studies of heme proteins. We also show the imidazole vs imidazolate differences in the in-plane vibrations that are not accessible to resonance Raman studies. The in-plane vibrations are at lower frequency in the imidazolate derivatives; the doming mode shifts are inconclusive. The stiffness, an experimentally determined force constant that averages the vibrational details to quantify the nearest-neighbor interactions, confirms that deprotonation inverts the relative strengths of axial and equatorial coordination.

| S-EPMC3613136 | biostudies-literature

Electronic configuration of high-spin imidazole-ligated iron(II) octaethylporphyrinates.

Project description:The preparation and characterization of two new five-coordinate, imidazole-ligated, high-spin iron(II) octaethylporphyrinates is described. [Fe(OEP)(1,2-Me2Im)] and [Fe(OEP)(2-MeHIm)] have been characterized by X-ray structure determinations and temperature-dependent Mössbauer spectroscopy in zero and applied magnetic fields. The distinction between imidazole-ligated and other ligands in high-spin iron(II) porphyrinates, noted for a series of tetraarylporphyrinate derivatives (Hu, C.; Roth, A.; Ellison, M. K.; An, J.; Ellis, C. M.; Schiltz, C. E.; Scheidt, W. R. J. Am. Chem. Soc. 2005, 127, 5675), is seen here as well. The sign of the quadrupole-splitting constant is again negative, which is unique to the imidazole-ligated derivatives and suggests a distinct electronic structure. The derivatives again display a remarkable temperature dependence in the quadrupole splitting, which is also seen for deoxymyoglobin and -hemoglobin. Structural features for the two new derivatives are similar to those seen earlier, although the core conformations show somewhat more doming character.

| S-EPMC1525298 | biostudies-literature

Hydrogen bonding influence of 1,10-phenanthroline on five-coordinate high-spin imidazole-ligated iron(II) porphyrinates.

Project description:The influence of a hydrogen bond to the coordinated imidazole on the geometric and electronic structure of iron has been further studied in new complexes of five-coordinate high-spin imidazole-ligated iron(II) porphyrinates. With 1,10-phenanthroline (1,10-phen) as the hydrogen-bond acceptor, several new octaethylporphyrin dianion (OEP) and meso-tetraphenylporphyrin dianion (TPP) derivatives have been synthesized and characterized by X-ray crystallography and Mössbauer spectroscopy. In all three new structures, the porphyrin molecules and 1,10-phenanthroline molecules have been found with a ratio of 1:1. All the porphyrin derivatives are five-coordinate 2-methylimidazole-ligated iron(II) species. 1,10-Phenanthroline is hydrogen bonded to the coordinated imidazole to form two unequal hydrogen bonds. The Fe-N p and Fe-N Im bond lengths and displacement of the iron atom out of the porphyrin plane are similar to those in imidazole-ligated species. Mössbauer measurements showed remarkable temperature dependence; the analysis of the data obtained in applied magnetic field for [Fe(OEP)(2-MeHIm)].(1,10-phen) gave a negative quadrupole splitting value and large asymmetry parameters. All the structural and Mössbauer properties suggest that these new hydrogen-bonded species have the same electronic configuration as imidazole-ligated species.

| S-EPMC2630385 | biostudies-literature

Comparison of cyanide and carbon monoxide as ligands in iron(II) porphyrinates.

Project description:Spot the difference: The five-coordinate iron(II) cyanoporphyrinates, which are spin-crossover compounds, can be used to synthesize previously unknown six-coordinate complexes. Bis(cyano) and (cyano)imidazole complexes are presented, and the five- and six-coordinate (cyano)iron(II) derivatives are compared with analogous CO complexes.

| S-EPMC2893548 | biostudies-literature

Nuclear resonance vibrational spectra of five-coordinate imidazole-ligated iron(II) porphyrinates.

Project description:Nuclear resonance vibrational spectra have been obtained for six five-coordinate imidazole-ligated iron(II) porphyrinates, [Fe(Por)(L)] (Por = tetraphenylporphyrinate, octaethylporphyrinate, tetratolylporphyrinate, or protoporphyrinate IX and L = 2-methylimidazole or 1,2-dimethylimidazole). Measurements have been made on both powder and oriented crystal samples. The spectra are dominated by strong signals around 200-300 cm(-1). Although the in-plane and out-of-plane vibrations are seriously overlapped, oriented crystal spectra allow their deconvolution. Thus, oriented crystal experimental data, along with density functional theory (DFT) calculations, enable the assignment of key vibrations in the spectra. Molecular dynamics are also discussed. The nature of the Fe-N(Im) vibrations has been elaborated further than was possible from resonance Raman studies. Our study suggests that the Fe motions are coupled with the porphyrin core and peripheral groups motions. Both peripheral groups and their conformations have significant influence on the vibrational spectra (position and shape).

| S-EPMC3273671 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data