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Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru.

ABSTRACT: Studies of deeply buried, sedimentary microbial communities and associated biogeochemical processes during Ocean Drilling Program Leg 201 showed elevated prokaryotic cell numbers in sediment layers where methane is consumed anaerobically at the expense of sulfate. Here, we show that extractable archaeal rRNA, selecting only for active community members in these ecosystems, is dominated by sequences of uncultivated Archaea affiliated with the Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group, whereas known methanotrophic Archaea are not detectable. Carbon flow reconstructions based on stable isotopic compositions of whole archaeal cells, intact archaeal membrane lipids, and other sedimentary carbon pools indicate that these Archaea assimilate sedimentary organic compounds other than methane even though methanotrophy accounts for a major fraction of carbon cycled in these ecosystems. Oxidation of methane by members of Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group without assimilation of methane-carbon provides a plausible explanation. Maintenance energies of these subsurface communities appear to be orders of magnitude lower than minimum values known from laboratory observations, and ecosystem-level carbon budgets suggest that community turnover times are on the order of 100-2,000 years. Our study provides clues about the metabolic functionality of two cosmopolitan groups of uncultured Archaea.

SUBMITTER: Biddle JF

PROVIDER: S-EPMC1533785 | biostudies-literature | 2006 Mar

REPOSITORIES: biostudies-literature

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Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru.

Biddle Jennifer F JF Lipp Julius S JS Lever Mark A MA Lloyd Karen G KG Sørensen Ketil B KB Anderson Rika R Fredricks Helen F HF Elvert Marcus M Kelly Timothy J TJ Schrag Daniel P DP Sogin Mitchell L ML Brenchley Jean E JE Teske Andreas A House Christopher H CH Hinrichs Kai-Uwe KU

Proceedings of the National Academy of Sciences of the United States of America 20060227 10

Studies of deeply buried, sedimentary microbial communities and associated biogeochemical processes during Ocean Drilling Program Leg 201 showed elevated prokaryotic cell numbers in sediment layers where methane is consumed anaerobically at the expense of sulfate. Here, we show that extractable archaeal rRNA, selecting only for active community members in these ecosystems, is dominated by sequences of uncultivated Archaea affiliated with the Marine Benthic Group B and the Miscellaneous Crenarcha ...[more]

PMID: 16505362

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Project description:The immovable nature of built heritage means that it is particularly vulnerable during times of armed conflict. Although impacts from small arms and shrapnel leave relatively inconspicuous impact scars, they elevate the risk of future stone deterioration. This study investigates the subsurface damage caused by bullet impacts, which is not apparent from surface inspection, in order to better understand the geometry and mechanics of this form of conflict damage to heritage. Controlled firearm experiments were conducted to simulate conflict damage to sandstone and limestone buildings. The bullet impacts created conical fractures or zones of increased fracture intensity below the impact, radial fractures, and spallation, in addition to a crater. Dynamic fracture distinguishes the formation of these features from quasi static cone crack experiments, while the lack of a shockwave differentiates these bullet impacts from hypervelocity experiments. Damage was created by momentum transfer from the bullet, so that differences in target properties had large effects on the nature of the damage. The crater in the limestone target was almost an order of magnitude deeper than the sandstone crater, and large open fractures formed in the limestone below the crater floor, compared with zones of increased fracture intensity in the sandstone target. Microstructural analysis of subsurface damage showed that fracture intensity decreased with increasing distance from the impact centre, suggesting that regions proximal to the impact are at increased risk of future deterioration. Conical subsurface fractures dipping away from the impact beneath multiple impact craters could link up, creating a continuous fracture network. By providing pathways for moisture and other weathering agents, fractures enlarge the region at increased risk of deterioration. Their lack of surface expression makes understanding their formation a vital part of future surveying and post conflict assessments.

Dataset Information

Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru.

Publications

Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru.

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