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Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru.

ABSTRACT: Studies of deeply buried, sedimentary microbial communities and associated biogeochemical processes during Ocean Drilling Program Leg 201 showed elevated prokaryotic cell numbers in sediment layers where methane is consumed anaerobically at the expense of sulfate. Here, we show that extractable archaeal rRNA, selecting only for active community members in these ecosystems, is dominated by sequences of uncultivated Archaea affiliated with the Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group, whereas known methanotrophic Archaea are not detectable. Carbon flow reconstructions based on stable isotopic compositions of whole archaeal cells, intact archaeal membrane lipids, and other sedimentary carbon pools indicate that these Archaea assimilate sedimentary organic compounds other than methane even though methanotrophy accounts for a major fraction of carbon cycled in these ecosystems. Oxidation of methane by members of Marine Benthic Group B and the Miscellaneous Crenarchaeotal Group without assimilation of methane-carbon provides a plausible explanation. Maintenance energies of these subsurface communities appear to be orders of magnitude lower than minimum values known from laboratory observations, and ecosystem-level carbon budgets suggest that community turnover times are on the order of 100-2,000 years. Our study provides clues about the metabolic functionality of two cosmopolitan groups of uncultured Archaea.

SUBMITTER: Biddle JF

PROVIDER: S-EPMC1533785 | biostudies-literature | 2006 Mar

REPOSITORIES: biostudies-literature

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Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru.

Biddle Jennifer F JF Lipp Julius S JS Lever Mark A MA Lloyd Karen G KG Sørensen Ketil B KB Anderson Rika R Fredricks Helen F HF Elvert Marcus M Kelly Timothy J TJ Schrag Daniel P DP Sogin Mitchell L ML Brenchley Jean E JE Teske Andreas A House Christopher H CH Hinrichs Kai-Uwe KU

Proceedings of the National Academy of Sciences of the United States of America 20060227 10

Studies of deeply buried, sedimentary microbial communities and associated biogeochemical processes during Ocean Drilling Program Leg 201 showed elevated prokaryotic cell numbers in sediment layers where methane is consumed anaerobically at the expense of sulfate. Here, we show that extractable archaeal rRNA, selecting only for active community members in these ecosystems, is dominated by sequences of uncultivated Archaea affiliated with the Marine Benthic Group B and the Miscellaneous Crenarcha ...[more]

PMID: 16505362

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Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru.

Publications

Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru.

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