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ASGS: an alternative splicing graph web service.

ABSTRACT: Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcript splicing graph, an exon summary, splicing events classification and a single line graph to facilitate experimental analysis. This freely available web service can be accessed at http://asgs.biolinfo.org.

SUBMITTER: Bollina D

PROVIDER: S-EPMC1538904 | biostudies-literature | 2006 Jul

REPOSITORIES: biostudies-literature

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ASGS: an alternative splicing graph web service.

Bollina Durgaprasad D Lee Bernett T K BT Tan Tin Wee TW Ranganathan Shoba S

Nucleic acids research 20060701 Web Server issue

Alternative transcript diversity manifests itself a prime cause of complexity in higher eukaryotes. The Alternative Splicing Graph Server (ASGS) is a web service facilitating the systematic study of alternatively spliced genes of higher eukaryotes by generating splicing graphs for the compact visual representation of transcript diversity from a single gene. Taking a set of transcripts in General Feature Format as input, ASGS identifies distinct reference and variable exons, generates a transcrip ...[more]

PMID: 16845045

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