AVISPA: a web tool for the prediction and analysis of alternative splicing.
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ABSTRACT:
SUBMITTER: Barash Y
PROVIDER: S-EPMC4014802 | biostudies-literature | 2013
REPOSITORIES: biostudies-literature
Publications
AVISPA: a web tool for the prediction and analysis of alternative splicing.
Barash Yoseph Y Vaquero-Garcia Jorge J González-Vallinas Juan J Xiong Hui Yuan HY Gao Weijun W Lee Leo J LJ Frey Brendan J BJ
Genome biology 20130101 10
Transcriptome complexity and its relation to numerous diseases underpins the need to predict in silico splice variants and the regulatory elements that affect them. Building upon our recently described splicing code, we developed AVISPA, a Galaxy-based web tool for splicing prediction and analysis. Given an exon and its proximal sequence, the tool predicts whether the exon is alternatively spliced, displays tissue-dependent splicing patterns, and whether it has associated regulatory elements. We ...[more]
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