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PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification.

ABSTRACT: The Berkeley Phylogenomics Group presents PhyloFacts, a structural phylogenomic encyclopedia containing almost 10,000 'books' for protein families and domains, with pre-calculated structural, functional and evolutionary analyses. PhyloFacts enables biologists to avoid the systematic errors associated with function prediction by homology through the integration of a variety of experimental data and bioinformatics methods in an evolutionary framework. Users can submit sequences for classification to families and functional subfamilies. PhyloFacts is available as a worldwide web resource from http://phylogenomics.berkeley.edu/phylofacts.

SUBMITTER: Krishnamurthy N

PROVIDER: S-EPMC1794543 | biostudies-literature | 2006

REPOSITORIES: biostudies-literature

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PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification.

Krishnamurthy Nandini N Brown Duncan P DP Kirshner Dan D Sjölander Kimmen K

Genome biology 20060101 9

The Berkeley Phylogenomics Group presents PhyloFacts, a structural phylogenomic encyclopedia containing almost 10,000 'books' for protein families and domains, with pre-calculated structural, functional and evolutionary analyses. PhyloFacts enables biologists to avoid the systematic errors associated with function prediction by homology through the integration of a variety of experimental data and bioinformatics methods in an evolutionary framework. Users can submit sequences for classification ...[more]

PMID: 16973001

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