Boosting with stumps for predicting transcription start sites.
Ontology highlight
ABSTRACT:
SUBMITTER: Zhao X
PROVIDER: S-EPMC1852414 | biostudies-literature | 2007
REPOSITORIES: biostudies-literature
Publications
Boosting with stumps for predicting transcription start sites.
Zhao Xiaoyue X Xuan Zhenyu Z Zhang Michael Q MQ
Genome biology 20070101 2
Promoter prediction is a difficult but important problem in gene finding, and it is critical for elucidating the regulation of gene expression. We introduce a new promoter prediction program, CoreBoost, which applies a boosting technique with stumps to select important small-scale as well as large-scale features. CoreBoost improves greatly on locating transcription start sites. We also demonstrate that by further utilizing some tissue-specific information, better accuracy can be achieved. ...[more]
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