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RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign.

ABSTRACT: We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop-loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural classification, sequence, keyword or inter-helix angles. In addition, the structural data was subjected to energy minimization. This database is useful for analyzing RNA structures as well as for designing novel RNA structures on a nanoscale. The database can be accessed at: http://rnajunction.abcc.ncifcrf.gov/

SUBMITTER: Bindewald E

PROVIDER: S-EPMC2238914 | biostudies-literature | 2008 Jan

REPOSITORIES: biostudies-literature

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RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign.

Bindewald Eckart E Hayes Robert R Yingling Yaroslava G YG Kasprzak Wojciech W Shapiro Bruce A BA

Nucleic acids research 20071018 Database issue

We developed a database called RNAJunction that contains structure and sequence information for RNA structural elements such as helical junctions, internal loops, bulges and loop-loop interactions. Our database provides a user-friendly way of searching structural elements by PDB code, structural classification, sequence, keyword or inter-helix angles. In addition, the structural data was subjected to energy minimization. This database is useful for analyzing RNA structures as well as for designi ...[more]

PMID: 17947325

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