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Integrating biological data--the Distributed Annotation System.

ABSTRACT: The Distributed Annotation System (DAS) is a widely adopted protocol for dynamically integrating a wide range of biological data from geographically diverse sources. DAS continues to expand its applicability and evolve in response to new challenges facing integrative bioinformatics.Here we describe the various infrastructure components of DAS and present a new extended version of the DAS specification. Version 1.53E incorporates several recent developments, including its extension to serve new data types and an ontology for protein features.Our extensions to the DAS protocol have facilitated the integration of new data types, and our improvements to the existing DAS infrastructure have addressed recent challenges. The steadily increasing numbers of available data sources demonstrates further adoption of the DAS protocol.

SUBMITTER: Jenkinson AM

PROVIDER: S-EPMC2500094 | biostudies-literature | 2008 Jul

REPOSITORIES: biostudies-literature

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Integrating biological data--the Distributed Annotation System.

Jenkinson Andrew M AM Albrecht Mario M Birney Ewan E Blankenburg Hagen H Down Thomas T Finn Robert D RD Hermjakob Henning H Hubbard Tim J P TJ Jimenez Rafael C RC Jones Philip P Kähäri Andreas A Kulesha Eugene E Macías José R JR Reeves Gabrielle A GA Prlić Andreas A

BMC bioinformatics 20080722

<h4>Background</h4>The Distributed Annotation System (DAS) is a widely adopted protocol for dynamically integrating a wide range of biological data from geographically diverse sources. DAS continues to expand its applicability and evolve in response to new challenges facing integrative bioinformatics.<h4>Results</h4>Here we describe the various infrastructure components of DAS and present a new extended version of the DAS specification. Version 1.53E incorporates several recent developments, inc ...[more]

PMID: 18673527

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