Unknown

Dataset Information

0

Cross-chip probe matching tool: A web-based tool for linking microarray probes within and across plant species.


ABSTRACT: The CCPMT is a free, web-based tool that allows plant investigators to rapidly determine if a given gene is present across various microarray platforms, which, of a list of genes, is present on array(s), and which gene a probe or probe set queries and vice versa, and to compare and contrast the gene contents of arrays. The CCPMT also maps a probe or probe sets to a gene or genes within and across species, and permits the mapping of the entire content from one array to another. By using the CCPMT, investigators will have a better understanding of the contents of arrays, a better ability to link data between experiments, ability to conduct meta-analysis and combine datasets, and an increased ability to conduct data mining projects.

SUBMITTER: Ghanekar R 

PROVIDER: S-EPMC2570748 | biostudies-literature | 2008

REPOSITORIES: biostudies-literature

altmetric image

Publications

Cross-chip probe matching tool: A web-based tool for linking microarray probes within and across plant species.

Ghanekar Ruchi R   Srinivasasainagendra Vinodh V   Page Grier P GP  

International journal of plant genomics 20081021


The CCPMT is a free, web-based tool that allows plant investigators to rapidly determine if a given gene is present across various microarray platforms, which, of a list of genes, is present on array(s), and which gene a probe or probe set queries and vice versa, and to compare and contrast the gene contents of arrays. The CCPMT also maps a probe or probe sets to a gene or genes within and across species, and permits the mapping of the entire content from one array to another. By using the CCPMT  ...[more]

Similar Datasets

| S-EPMC3902802 | biostudies-literature
| S-EPMC3048354 | biostudies-literature
| S-EPMC3031039 | biostudies-literature
| S-EPMC3366882 | biostudies-literature
| S-EPMC3884118 | biostudies-literature
| S-EPMC2490733 | biostudies-literature
| PRJNA116759 | ENA
2009-10-27 | GSE15832 | GEO
| S-EPMC3212930 | biostudies-literature
| S-EPMC7126064 | biostudies-literature