Dataset Information

High-pressure polymeric phases of carbon dioxide.

ABSTRACT: Understanding the structural transformations of solid CO(2) from a molecular solid characterized by weak intermolecular bonding to a 3-dimensional network solid at high pressure has challenged researchers for the past decade. We employ the recently developed metadynamics method combined with ab initio calculations to provide fundamental insight into recent experimental reports on carbon dioxide in the 60-80 GPa pressure region. Pressure-induced polymeric phases and their transformation mechanisms are found. Metadynamics simulations starting from the CO(2)-II (P4(2)/mnm) at 60 GPa and 600 K proceed via an intermediate, partially polymerized phase, and finally yield a fully tetrahedral, layered structure (P-4m2). Based on the agreement between calculated and experimental Raman and X-ray patterns, the recently identified phase VI [Iota V, et al. (2007) Sixfold coordinated carbon dioxide VI. Nature Mat 6:34-38], assumed to be disordered stishovite-like, is instead interpreted as the result of an incomplete transformation of the molecular phase into a final layered structure. In addition, an alpha-cristobalite-like structure (P4(1)2(1)2), is predicted to be formed from CO(2)-III (Cmca) via an intermediate Pbca structure at 80 GPa and low temperatures (<300 K). Defects in the crystals are frequently observed in the calculations at 300 K whereas at 500 to 700 K, CO(2)-III transforms to an amorphous form, consistent with experiment [Santoro M, et al. (2006) Amorphous silica-like carbon dioxide. Nature 441:857-860], but the simulation yields additional structural details for this disordered solid.

SUBMITTER: Sun J

PROVIDER: S-EPMC2669398 | biostudies-literature | 2009 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

High-pressure polymeric phases of carbon dioxide.

Sun Jian J Klug Dennis D DD Martonák Roman R Montoya Javier Antonio JA Lee Mal-Soon MS Scandolo Sandro S Tosatti Erio E

Proceedings of the National Academy of Sciences of the United States of America 20090330 15

Understanding the structural transformations of solid CO(2) from a molecular solid characterized by weak intermolecular bonding to a 3-dimensional network solid at high pressure has challenged researchers for the past decade. We employ the recently developed metadynamics method combined with ab initio calculations to provide fundamental insight into recent experimental reports on carbon dioxide in the 60-80 GPa pressure region. Pressure-induced polymeric phases and their transformation mechanism ...[more]

PMID: 19332796

Similar Datasets

Project description:Physiological effects of carbon dioxide and impact on genome-wide transcript profiles were analysed in chemostat cultures of Saccharomyces cerevisiae. In anaerobic, glucose-limited chemostat cultures grown at atmospheric pressure, cultivation under CO2-saturated conditions had only a marginal (<10%) impact on the biomass yield. Conversely, a 25% decrease of the biomass yield was found in aerobic, glucose-limited chemostat cultures aerated with a mixture of 79% CO2 and 21% O2. This observation indicated that respiratory metabolism is more sensitive to CO2 than fermentative metabolism. Consistent with the more pronounced physiological effects of CO2 in respiratory cultures, the number of CO2-responsive transcripts was higher in aerobic cultures than in anaerobic cultures. Many genes involved in mitochondrial functions showed a transcriptional response to elevated CO2 concentrations. This is consistent with an uncoupling effect of CO2 and/or intracellular bicarbonate on the mitochondrial inner membrane. Other transcripts that showed a significant transcriptional response to elevated CO2 included NCE103 (probably encoding carbonic anhydrase), PCK1 (encoding PEP carboxykinase) and members of the IMD gene family (encoding isozymes of inosine monophosphate dehydrogenase Experiment Overall Design: Knowledge on the genome-wide transcriptional response of S. cerevisiae to high CO2 concentrations may provide a deeper insight into the molecular mechanisms of CO2 stress. Such insight is essential to develop metabolic-engineering strategies for improving CO2 tolerance. Furthermore, identification of âsignature transcriptsâ that uniquely respond to CO2 stress may be applicable for diagnosing the CO2 status of industrial fermentations. It has recently been demonstrated that the combination of chemostat cultivation with DNA-microarray-based transcriptome analysis offers a powerful and reproducible approach to identify the transcriptional responses of yeasts to environmental parameters For this reason, in the present study we used chemostat cultures of S. cerevisiae to quantify the effect of CO2 on respiring and fermenting cells, and to determine the genome-wide transcriptional responses of this yeast to high CO2 concentrations.

Dataset Information

High-pressure polymeric phases of carbon dioxide.

Publications

High-pressure polymeric phases of carbon dioxide.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets