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The 2008 update of the Aspergillus nidulans genome annotation: a community effort.


ABSTRACT: The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology.

SUBMITTER: Wortman JR 

PROVIDER: S-EPMC2826280 | biostudies-literature | 2009 Mar

REPOSITORIES: biostudies-literature

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The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Wortman Jennifer Russo JR   Gilsenan Jane Mabey JM   Joardar Vinita V   Deegan Jennifer J   Clutterbuck John J   Andersen Mikael R MR   Archer David D   Bencina Mojca M   Braus Gerhard G   Coutinho Pedro P   von Döhren Hans H   Doonan John J   Driessen Arnold J M AJ   Durek Pawel P   Espeso Eduardo E   Fekete Erzsébet E   Flipphi Michel M   Estrada Carlos Garcia CG   Geysens Steven S   Goldman Gustavo G   de Groot Piet W J PW   Hansen Kim K   Harris Steven D SD   Heinekamp Thorsten T   Helmstaedt Kerstin K   Henrissat Bernard B   Hofmann Gerald G   Homan Tim T   Horio Tetsuya T   Horiuchi Hiroyuki H   James Steve S   Jones Meriel M   Karaffa Levente L   Karányi Zsolt Z   Kato Masashi M   Keller Nancy N   Kelly Diane E DE   Kiel Jan A K W JA   Kim Jung-Mi JM   van der Klei Ida J IJ   Klis Frans M FM   Kovalchuk Andriy A   Krasevec Nada N   Kubicek Christian P CP   Liu Bo B   Maccabe Andrew A   Meyer Vera V   Mirabito Pete P   Miskei Márton M   Mos Magdalena M   Mullins Jonathan J   Nelson David R DR   Nielsen Jens J   Oakley Berl R BR   Osmani Stephen A SA   Pakula Tiina T   Paszewski Andrzej A   Paulsen Ian I   Pilsyk Sebastian S   Pócsi István I   Punt Peter J PJ   Ram Arthur F J AF   Ren Qinghu Q   Robellet Xavier X   Robson Geoff G   Seiboth Bernhard B   van Solingen Piet P   Specht Thomas T   Sun Jibin J   Taheri-Talesh Naimeh N   Takeshita Norio N   Ussery Dave D   vanKuyk Patricia A PA   Visser Hans H   van de Vondervoort Peter J I PJ   de Vries Ronald P RP   Walton Jonathan J   Xiang Xin X   Xiong Yi Y   Zeng An Ping AP   Brandt Bernd W BW   Cornell Michael J MJ   van den Hondel Cees A M J J CA   Visser Jacob J   Oliver Stephen G SG   Turner Geoffrey G  

Fungal genetics and biology : FG & B 20081225


The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contai  ...[more]

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