Dataset Information

Quantifying subpixel accuracy: an experimental method for measuring accuracy in image-correlation-based, single-particle tracking.

ABSTRACT: Single-particle tracking (SPT) is a range of powerful analysis techniques that measure particle motion from video microscopy image sequences. SPT is used to study the behavior of motor proteins and associated organelle transport within a cell. Many SPT algorithms deliver subpixel accurate measurements with noisy data corresponding to sub-10-nm resolution. Image-correlation techniques have been shown to be the most accurate method of tracking extended objects. However, to date, it has not been possible to determine the level of error when measuring the motion of an arbitrary particle with this method. In this article we derive a method for experimentally determining the accuracy of image-correlation-based SPT. We then apply this technique to a series of confocal fluorescence microscope image sequences of mitochondria, demonstrating the possibility of making measurements accurate to 5 nm when working with extended objects within live cells. In doing so we show that for particles with a low signal/noise ratio, the accuracy can vary by a factor of 2, corresponding to different particle shapes for a given signal/noise ratio. Use of the presented technique will allow researchers to quantify the accuracy of their measurements on a per-particle basis. This in turn will allow the selection of the most accurately tracked particles, helping to push the accuracy of spatial measurements well below the diffraction limit. This is particularly important for the study of molecular motors whose step size is a similar scale to these limits.

SUBMITTER: Saunter CD

PROVIDER: S-EPMC2856138 | biostudies-literature | 2010 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Quantifying subpixel accuracy: an experimental method for measuring accuracy in image-correlation-based, single-particle tracking.

Saunter Christopher D CD

Biophysical journal 20100401 8

Single-particle tracking (SPT) is a range of powerful analysis techniques that measure particle motion from video microscopy image sequences. SPT is used to study the behavior of motor proteins and associated organelle transport within a cell. Many SPT algorithms deliver subpixel accurate measurements with noisy data corresponding to sub-10-nm resolution. Image-correlation techniques have been shown to be the most accurate method of tracking extended objects. However, to date, it has not been po ...[more]

PMID: 20409476

Similar Datasets

Project description:Label-free imaging techniques such as differential interference contrast (DIC) allow the observation of cells and large subcellular structures in their native, unperturbed states with minimal exposure to light. The development of robust computational image-analysis routines is vital to quantitative label-free imaging. The reliability of quantitative analysis of time-series microscopy data based on single-particle tracking relies on accurately detecting objects as distinct from the background, i.e., segmentation. Typical approaches to segmenting DIC images either involve converting images to those resembling phase contrast, mimicking the optics of DIC object formation, or using the morphological properties of objects. Here, we describe MATLAB based, single-particle tracking tool with a GUI for mobility analysis of objects from in vitro and in vivo DIC time-series microscopy. The tool integrates contrast enhancement with multiple modified Gaussian filters, automated threshold detection for segmentation and minimal distance-based two-dimensional single-particle tracking. We compare the relative performance of multiple filters and demonstrate the utility of the tool for DIC object tracking (DICOT). We quantify subcellular dynamics of a time series of Caenorhabditis elegans embryos in the one-celled stage by detecting birefringent yolk granules in the cytoplasm with high precision. The resulting two-dimensional map of oscillatory dynamics of granules quantifies the cytoplasmic flows driven by anaphasic spindle oscillations. The frequency of oscillations across the anterior-posterior (A-P) and transverse axes of the embryo correspond well with the reported frequency of spindle oscillations. We validate the quantitative accuracy of our method by tracking the in vitro diffusive mobility of micron-sized beads in glycerol solutions. Estimates of the diffusion coefficients of the granules are used to measure the viscosity of a dilution series of glycerol. Thus, our computational method is likely to be useful for both intracellular mobility and in vitro microrheology.

Dataset Information

Quantifying subpixel accuracy: an experimental method for measuring accuracy in image-correlation-based, single-particle tracking.

Publications

Quantifying subpixel accuracy: an experimental method for measuring accuracy in image-correlation-based, single-particle tracking.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure