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Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing.


ABSTRACT: Constructing mixtures of tagged or bar-coded DNAs for sequencing is an important requirement for the efficient use of next-generation sequencers in applications where limited sequence data are required per sample. There are many applications in which next-generation sequencing can be used effectively to sequence large mixed samples; an example is the characterization of microbial communities where

SUBMITTER: Harris JK 

PROVIDER: S-EPMC2893486 | biostudies-literature | 2010 Jun

REPOSITORIES: biostudies-literature

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Comparison of normalization methods for construction of large, multiplex amplicon pools for next-generation sequencing.

Harris J Kirk JK   Sahl Jason W JW   Castoe Todd A TA   Wagner Brandie D BD   Pollock David D DD   Spear John R JR  

Applied and environmental microbiology 20100423 12


Constructing mixtures of tagged or bar-coded DNAs for sequencing is an important requirement for the efficient use of next-generation sequencers in applications where limited sequence data are required per sample. There are many applications in which next-generation sequencing can be used effectively to sequence large mixed samples; an example is the characterization of microbial communities where <or=1,000 sequences per samples are adequate to address research questions. Thus, it is possible to  ...[more]

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