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New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.


ABSTRACT: Levels of circulating glucose are tightly regulated. To identify new loci influencing glycemic traits, we performed meta-analyses of 21 genome-wide association studies informative for fasting glucose, fasting insulin and indices of beta-cell function (HOMA-B) and insulin resistance (HOMA-IR) in up to 46,186 nondiabetic participants. Follow-up of 25 loci in up to 76,558 additional subjects identified 16 loci associated with fasting glucose and HOMA-B and two loci associated with fasting insulin and HOMA-IR. These include nine loci newly associated with fasting glucose (in or near ADCY5, MADD, ADRA2A, CRY2, FADS1, GLIS3, SLC2A2, PROX1 and C2CD4B) and one influencing fasting insulin and HOMA-IR (near IGF1). We also demonstrated association of ADCY5, PROX1, GCK, GCKR and DGKB-TMEM195 with type 2 diabetes. Within these loci, likely biological candidate genes influence signal transduction, cell proliferation, development, glucose-sensing and circadian regulation. Our results demonstrate that genetic studies of glycemic traits can identify type 2 diabetes risk loci, as well as loci containing gene variants that are associated with a modest elevation in glucose levels but are not associated with overt diabetes.

SUBMITTER: Dupuis J 

PROVIDER: S-EPMC3018764 | biostudies-literature | 2010 Feb

REPOSITORIES: biostudies-literature

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New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.

Dupuis Josée J   Langenberg Claudia C   Prokopenko Inga I   Saxena Richa R   Soranzo Nicole N   Jackson Anne U AU   Wheeler Eleanor E   Glazer Nicole L NL   Bouatia-Naji Nabila N   Gloyn Anna L AL   Lindgren Cecilia M CM   Mägi Reedik R   Morris Andrew P AP   Randall Joshua J   Johnson Toby T   Elliott Paul P   Rybin Denis D   Thorleifsson Gudmar G   Steinthorsdottir Valgerdur V   Henneman Peter P   Grallert Harald H   Dehghan Abbas A   Hottenga Jouke Jan JJ   Franklin Christopher S CS   Navarro Pau P   Song Kijoung K   Goel Anuj A   Perry John R B JR   Egan Josephine M JM   Lajunen Taina T   Grarup Niels N   Sparsø Thomas T   Doney Alex A   Voight Benjamin F BF   Stringham Heather M HM   Li Man M   Kanoni Stavroula S   Shrader Peter P   Cavalcanti-Proença Christine C   Kumari Meena M   Qi Lu L   Timpson Nicholas J NJ   Gieger Christian C   Zabena Carina C   Rocheleau Ghislain G   Ingelsson Erik E   An Ping P   O'Connell Jeffrey J   Luan Jian'an J   Elliott Amanda A   McCarroll Steven A SA   Payne Felicity F   Roccasecca Rosa Maria RM   Pattou François F   Sethupathy Praveen P   Ardlie Kristin K   Ariyurek Yavuz Y   Balkau Beverley B   Barter Philip P   Beilby John P JP   Ben-Shlomo Yoav Y   Benediktsson Rafn R   Bennett Amanda J AJ   Bergmann Sven S   Bochud Murielle M   Boerwinkle Eric E   Bonnefond Amélie A   Bonnycastle Lori L LL   Borch-Johnsen Knut K   Böttcher Yvonne Y   Brunner Eric E   Bumpstead Suzannah J SJ   Charpentier Guillaume G   Chen Yii-Der Ida YD   Chines Peter P   Clarke Robert R   Coin Lachlan J M LJ   Cooper Matthew N MN   Cornelis Marilyn M   Crawford Gabe G   Crisponi Laura L   Day Ian N M IN   de Geus Eco J C EJ   Delplanque Jerome J   Dina Christian C   Erdos Michael R MR   Fedson Annette C AC   Fischer-Rosinsky Antje A   Forouhi Nita G NG   Fox Caroline S CS   Frants Rune R   Franzosi Maria Grazia MG   Galan Pilar P   Goodarzi Mark O MO   Graessler Jürgen J   Groves Christopher J CJ   Grundy Scott S   Gwilliam Rhian R   Gyllensten Ulf U   Hadjadj Samy S   Hallmans Göran G   Hammond Naomi N   Han Xijing X   Hartikainen Anna-Liisa AL   Hassanali Neelam N   Hayward Caroline C   Heath Simon C SC   Hercberg Serge S   Herder Christian C   Hicks Andrew A AA   Hillman David R DR   Hingorani Aroon D AD   Hofman Albert A   Hui Jennie J   Hung Joe J   Isomaa Bo B   Johnson Paul R V PR   Jørgensen Torben T   Jula Antti A   Kaakinen Marika M   Kaprio Jaakko J   Kesaniemi Y Antero YA   Kivimaki Mika M   Knight Beatrice B   Koskinen Seppo S   Kovacs Peter P   Kyvik Kirsten Ohm KO   Lathrop G Mark GM   Lawlor Debbie A DA   Le Bacquer Olivier O   Lecoeur Cécile C   Li Yun Y   Lyssenko Valeriya V   Mahley Robert R   Mangino Massimo M   Manning Alisa K AK   Martínez-Larrad María Teresa MT   McAteer Jarred B JB   McCulloch Laura J LJ   McPherson Ruth R   Meisinger Christa C   Melzer David D   Meyre David D   Mitchell Braxton D BD   Morken Mario A MA   Mukherjee Sutapa S   Naitza Silvia S   Narisu Narisu N   Neville Matthew J MJ   Oostra Ben A BA   Orrù Marco M   Pakyz Ruth R   Palmer Colin N A CN   Paolisso Giuseppe G   Pattaro Cristian C   Pearson Daniel D   Peden John F JF   Pedersen Nancy L NL   Perola Markus M   Pfeiffer Andreas F H AF   Pichler Irene I   Polasek Ozren O   Posthuma Danielle D   Potter Simon C SC   Pouta Anneli A   Province Michael A MA   Psaty Bruce M BM   Rathmann Wolfgang W   Rayner Nigel W NW   Rice Kenneth K   Ripatti Samuli S   Rivadeneira Fernando F   Roden Michael M   Rolandsson Olov O   Sandbaek Annelli A   Sandhu Manjinder M   Sanna Serena S   Sayer Avan Aihie AA   Scheet Paul P   Scott Laura J LJ   Seedorf Udo U   Sharp Stephen J SJ   Shields Beverley B   Sigurethsson Gunnar G   Sijbrands Eric J G EJ   Silveira Angela A   Simpson Laila L   Singleton Andrew A   Smith Nicholas L NL   Sovio Ulla U   Swift Amy A   Syddall Holly H   Syvänen Ann-Christine AC   Tanaka Toshiko T   Thorand Barbara B   Tichet Jean J   Tönjes Anke A   Tuomi Tiinamaija T   Uitterlinden André G AG   van Dijk Ko Willems KW   van Hoek Mandy M   Varma Dhiraj D   Visvikis-Siest Sophie S   Vitart Veronique V   Vogelzangs Nicole N   Waeber Gérard G   Wagner Peter J PJ   Walley Andrew A   Walters G Bragi GB   Ward Kim L KL   Watkins Hugh H   Weedon Michael N MN   Wild Sarah H SH   Willemsen Gonneke G   Willemsen Gonneke G   Witteman Jaqueline C M JC   Yarnell John W G JW   Zeggini Eleftheria E   Zelenika Diana D   Zethelius Björn B   Zhai Guangju G   Zhao Jing Hua JH   Zillikens M Carola MC   Borecki Ingrid B IB   Loos Ruth J F RJ   Meneton Pierre P   Magnusson Patrik K E PK   Nathan David M DM   Williams Gordon H GH   Hattersley Andrew T AT   Silander Kaisa K   Salomaa Veikko V   Smith George Davey GD   Bornstein Stefan R SR   Schwarz Peter P   Spranger Joachim J   Karpe Fredrik F   Shuldiner Alan R AR   Cooper Cyrus C   Dedoussis George V GV   Serrano-Ríos Manuel M   Morris Andrew D AD   Lind Lars L   Palmer Lyle J LJ   Hu Frank B FB   Franks Paul W PW   Ebrahim Shah S   Marmot Michael M   Kao W H Linda WH   Pankow James S JS   Sampson Michael J MJ   Kuusisto Johanna J   Laakso Markku M   Hansen Torben T   Pedersen Oluf O   Pramstaller Peter Paul PP   Wichmann H Erich HE   Illig Thomas T   Rudan Igor I   Wright Alan F AF   Stumvoll Michael M   Campbell Harry H   Wilson James F JF   Bergman Richard N RN   Buchanan Thomas A TA   Collins Francis S FS   Mohlke Karen L KL   Tuomilehto Jaakko J   Valle Timo T TT   Altshuler David D   Rotter Jerome I JI   Siscovick David S DS   Penninx Brenda W J H BW   Boomsma Dorret I DI   Deloukas Panos P   Spector Timothy D TD   Frayling Timothy M TM   Ferrucci Luigi L   Kong Augustine A   Thorsteinsdottir Unnur U   Stefansson Kari K   van Duijn Cornelia M CM   Aulchenko Yurii S YS   Cao Antonio A   Scuteri Angelo A   Schlessinger David D   Uda Manuela M   Ruokonen Aimo A   Jarvelin Marjo-Riitta MR   Waterworth Dawn M DM   Vollenweider Peter P   Peltonen Leena L   Mooser Vincent V   Abecasis Goncalo R GR   Wareham Nicholas J NJ   Sladek Robert R   Froguel Philippe P   Watanabe Richard M RM   Meigs James B JB   Groop Leif L   Boehnke Michael M   McCarthy Mark I MI   Florez Jose C JC   Barroso Inês I  

Nature genetics 20100117 2


Levels of circulating glucose are tightly regulated. To identify new loci influencing glycemic traits, we performed meta-analyses of 21 genome-wide association studies informative for fasting glucose, fasting insulin and indices of beta-cell function (HOMA-B) and insulin resistance (HOMA-IR) in up to 46,186 nondiabetic participants. Follow-up of 25 loci in up to 76,558 additional subjects identified 16 loci associated with fasting glucose and HOMA-B and two loci associated with fasting insulin a  ...[more]

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