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CARBANA: Carbon analysis program forprotein sequences.

ABSTRACT: There are lots of works gone into proteins to understand the nature of proteins. Hydrophobic interaction is the dominant force that drives the proteins to carry out the biochemical reactions in all living system. Carbon is the only element that contributes towards this hydrophobic interaction. Studies find that globular proteins prefer to have 31.45% of carbon for its stability. Taking this as standard, a carbon analysis program has been developed to study the carbon distribution profile of protein sequences. This carbon analysis program has been made available online. This can be accessed at www.rajasekaran.net.in/tools/carbana.html. This new program is hoped to help in identification and development of active sites, study of protein stability, evolutionary understating of proteins, gene identification, ligand binding site identification, and to solve the long-standing problem of protein-protein and protein-DNA interactions.

SUBMITTER: Rajasekaran E

PROVIDER: S-EPMC3055155 | biostudies-literature | 2011 Feb

REPOSITORIES: biostudies-literature

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CARBANA: Carbon analysis program forprotein sequences.

Rajasekaran Ekambaram E Vijayasarathy Marimuthu M

Bioinformation 20110215 10

There are lots of works gone into proteins to understand the nature of proteins. Hydrophobic interaction is the dominant force that drives the proteins to carry out the biochemical reactions in all living system. Carbon is the only element that contributes towards this hydrophobic interaction. Studies find that globular proteins prefer to have 31.45% of carbon for its stability. Taking this as standard, a carbon analysis program has been developed to study the carbon distribution profile of prot ...[more]

PMID: 21423892

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