Unknown

Dataset Information

0

Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method.


ABSTRACT: Here we report a novel design of linker primer that allows one to differentially amplify long tracts (average 3.0 kb with size ranges of 1-7 kb) or short DNAs (average 1.5 kb with size ranges of 0.5-3 kb) from a complex mixture. The method allows one to generate cDNA libraries enriched for long transcripts without size selection of insert DNAs. One representative library from newborn kidney includes 70% of clones bearing ATG start codons. A comparable library has been generated from 20 mouse blastocysts, containing only approximately 40 ng of total RNA. This universal PCR amplification scheme can provide a route to isolate very large cDNAs, even if they are expressed at very low levels.

SUBMITTER: Piao Y 

PROVIDER: S-EPMC311119 | biostudies-literature | 2001 Sep

REPOSITORIES: biostudies-literature

altmetric image

Publications

Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method.

Piao Y Y   Ko N T NT   Lim M K MK   Ko M S MS  

Genome research 20010901 9


Here we report a novel design of linker primer that allows one to differentially amplify long tracts (average 3.0 kb with size ranges of 1-7 kb) or short DNAs (average 1.5 kb with size ranges of 0.5-3 kb) from a complex mixture. The method allows one to generate cDNA libraries enriched for long transcripts without size selection of insert DNAs. One representative library from newborn kidney includes 70% of clones bearing ATG start codons. A comparable library has been generated from 20 mouse bla  ...[more]

Similar Datasets

| S-EPMC3045797 | biostudies-literature
| S-EPMC3118787 | biostudies-literature
| S-EPMC4164538 | biostudies-literature
| S-EPMC3188800 | biostudies-literature
| S-EPMC2134933 | biostudies-literature
| S-EPMC4170940 | biostudies-literature
| S-EPMC3497318 | biostudies-literature
| S-EPMC4260880 | biostudies-literature
| S-EPMC3174253 | biostudies-literature
| S-EPMC5069770 | biostudies-literature