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Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.


ABSTRACT: Adult height is a classic polygenic trait of high heritability (h(2) approximately 0.8). More than 180 single nucleotide polymorphisms (SNPs), identified mostly in populations of European descent, are associated with height. These variants convey modest effects and explain approximately10% of the variance in height. Discovery efforts in other populations, while limited, have revealed loci for height not previously implicated in individuals of European ancestry. Here, we performed a meta-analysis of genome-wide association (GWA) results for adult height in 20,427 individuals of African ancestry with replication in up to 16,436 African Americans. We found two novel height loci (Xp22-rs12393627, P?=?3.4×10(-12) and 2p14-rs4315565, P?=?1.2×10(-8)). As a group, height associations discovered in European-ancestry samples replicate in individuals of African ancestry (P?=?1.7×10(-4) for overall replication). Fine-mapping of the European height loci in African-ancestry individuals showed an enrichment of SNPs that are associated with expression of nearby genes when compared to the index European height SNPs (P<0.01). Our results highlight the utility of genetic studies in non-European populations to understand the etiology of complex human diseases and traits.

SUBMITTER: N'Diaye A 

PROVIDER: S-EPMC3188544 | biostudies-literature | 2011 Oct

REPOSITORIES: biostudies-literature

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Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.

N'Diaye Amidou A   Chen Gary K GK   Palmer Cameron D CD   Ge Bing B   Tayo Bamidele B   Mathias Rasika A RA   Ding Jingzhong J   Nalls Michael A MA   Adeyemo Adebowale A   Adoue Véronique V   Ambrosone Christine B CB   Atwood Larry L   Bandera Elisa V EV   Becker Lewis C LC   Berndt Sonja I SI   Bernstein Leslie L   Blot William J WJ   Boerwinkle Eric E   Britton Angela A   Casey Graham G   Chanock Stephen J SJ   Demerath Ellen E   Deming Sandra L SL   Diver W Ryan WR   Fox Caroline C   Harris Tamara B TB   Hernandez Dena G DG   Hu Jennifer J JJ   Ingles Sue A SA   John Esther M EM   Johnson Craig C   Keating Brendan B   Kittles Rick A RA   Kolonel Laurence N LN   Kritchevsky Stephen B SB   Le Marchand Loic L   Lohman Kurt K   Liu Jiankang J   Millikan Robert C RC   Murphy Adam A   Musani Solomon S   Neslund-Dudas Christine C   North Kari E KE   Nyante Sarah S   Ogunniyi Adesola A   Ostrander Elaine A EA   Papanicolaou George G   Patel Sanjay S   Pettaway Curtis A CA   Press Michael F MF   Redline Susan S   Rodriguez-Gil Jorge L JL   Rotimi Charles C   Rybicki Benjamin A BA   Salako Babatunde B   Schreiner Pamela J PJ   Signorello Lisa B LB   Singleton Andrew B AB   Stanford Janet L JL   Stram Alex H AH   Stram Daniel O DO   Strom Sara S SS   Suktitipat Bhoom B   Thun Michael J MJ   Witte John S JS   Yanek Lisa R LR   Ziegler Regina G RG   Zheng Wei W   Zhu Xiaofeng X   Zmuda Joseph M JM   Zonderman Alan B AB   Evans Michele K MK   Liu Yongmei Y   Becker Diane M DM   Cooper Richard S RS   Pastinen Tomi T   Henderson Brian E BE   Hirschhorn Joel N JN   Lettre Guillaume G   Haiman Christopher A CA  

PLoS genetics 20111006 10


Adult height is a classic polygenic trait of high heritability (h(2) approximately 0.8). More than 180 single nucleotide polymorphisms (SNPs), identified mostly in populations of European descent, are associated with height. These variants convey modest effects and explain approximately10% of the variance in height. Discovery efforts in other populations, while limited, have revealed loci for height not previously implicated in individuals of European ancestry. Here, we performed a meta-analysis  ...[more]

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