Completion of autobuilt protein models using a database of protein fragments.
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ABSTRACT:
SUBMITTER: Cowtan K
PROVIDER: S-EPMC3322592 | biostudies-literature | 2012 Apr
REPOSITORIES: biostudies-literature
Publications
Completion of autobuilt protein models using a database of protein fragments.
Acta crystallographica. Section D, Biological crystallography 20120316 Pt 4
Two developments in the process of automated protein model building in the Buccaneer software are presented. A general-purpose library for protein fragments of arbitrary size is described, with a highly optimized search method allowing the use of a larger database than in previous work. The problem of assembling an autobuilt model into complete chains is discussed. This involves the assembly of disconnected chain fragments into complete molecules and the use of the database of protein fragments ...[more]
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