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A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.


ABSTRACT: Sex hormone-binding globulin (SHBG) is a glycoprotein responsible for the transport and biologic availability of sex steroid hormones, primarily testosterone and estradiol. SHBG has been associated with chronic diseases including type 2 diabetes (T2D) and with hormone-sensitive cancers such as breast and prostate cancer. We performed a genome-wide association study (GWAS) meta-analysis of 21,791 individuals from 10 epidemiologic studies and validated these findings in 7,046 individuals in an additional six studies. We identified twelve genomic regions (SNPs) associated with circulating SHBG concentrations. Loci near the identified SNPs included SHBG (rs12150660, 17p13.1, p = 1.8 × 10(-106)), PRMT6 (rs17496332, 1p13.3, p = 1.4 × 10(-11)), GCKR (rs780093, 2p23.3, p = 2.2 × 10(-16)), ZBTB10 (rs440837, 8q21.13, p = 3.4 × 10(-09)), JMJD1C (rs7910927, 10q21.3, p = 6.1 × 10(-35)), SLCO1B1 (rs4149056, 12p12.1, p = 1.9 × 10(-08)), NR2F2 (rs8023580, 15q26.2, p = 8.3 × 10(-12)), ZNF652 (rs2411984, 17q21.32, p = 3.5 × 10(-14)), TDGF3 (rs1573036, Xq22.3, p = 4.1 × 10(-14)), LHCGR (rs10454142, 2p16.3, p = 1.3 × 10(-07)), BAIAP2L1 (rs3779195, 7q21.3, p = 2.7 × 10(-08)), and UGT2B15 (rs293428, 4q13.2, p = 5.5 × 10(-06)). These genes encompass multiple biologic pathways, including hepatic function, lipid metabolism, carbohydrate metabolism and T2D, androgen and estrogen receptor function, epigenetic effects, and the biology of sex steroid hormone-responsive cancers including breast and prostate cancer. We found evidence of sex-differentiated genetic influences on SHBG. In a sex-specific GWAS, the loci 4q13.2-UGT2B15 was significant in men only (men p = 2.5 × 10(-08), women p = 0.66, heterogeneity p = 0.003). Additionally, three loci showed strong sex-differentiated effects: 17p13.1-SHBG and Xq22.3-TDGF3 were stronger in men, whereas 8q21.12-ZBTB10 was stronger in women. Conditional analyses identified additional signals at the SHBG gene that together almost double the proportion of variance explained at the locus. Using an independent study of 1,129 individuals, all SNPs identified in the overall or sex-differentiated or conditional analyses explained ~15.6% and ~8.4% of the genetic variation of SHBG concentrations in men and women, respectively. The evidence for sex-differentiated effects and allelic heterogeneity highlight the importance of considering these features when estimating complex trait variance.

SUBMITTER: Coviello AD 

PROVIDER: S-EPMC3400553 | biostudies-literature | 2012

REPOSITORIES: biostudies-literature

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A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.

Coviello Andrea D AD   Haring Robin R   Wellons Melissa M   Vaidya Dhananjay D   Lehtimäki Terho T   Keildson Sarah S   Lunetta Kathryn L KL   He Chunyan C   Fornage Myriam M   Lagou Vasiliki V   Mangino Massimo M   Onland-Moret N Charlotte NC   Chen Brian B   Eriksson Joel J   Garcia Melissa M   Liu Yong Mei YM   Koster Annemarie A   Lohman Kurt K   Lyytikäinen Leo-Pekka LP   Petersen Ann-Kristin AK   Prescott Jennifer J   Stolk Lisette L   Vandenput Liesbeth L   Wood Andrew R AR   Zhuang Wei Vivian WV   Ruokonen Aimo A   Hartikainen Anna-Liisa AL   Pouta Anneli A   Bandinelli Stefania S   Biffar Reiner R   Brabant Georg G   Cox David G DG   Chen Yuhui Y   Cummings Steven S   Ferrucci Luigi L   Gunter Marc J MJ   Hankinson Susan E SE   Martikainen Hannu H   Hofman Albert A   Homuth Georg G   Illig Thomas T   Jansson John-Olov JO   Johnson Andrew D AD   Karasik David D   Karlsson Magnus M   Kettunen Johannes J   Kiel Douglas P DP   Kraft Peter P   Liu Jingmin J   Ljunggren Östen Ö   Lorentzon Mattias M   Maggio Marcello M   Markus Marcello R P MR   Mellström Dan D   Miljkovic Iva I   Mirel Daniel D   Nelson Sarah S   Morin Papunen Laure L   Peeters Petra H M PH   Prokopenko Inga I   Raffel Leslie L   Reincke Martin M   Reiner Alex P AP   Rexrode Kathryn K   Rivadeneira Fernando F   Schwartz Stephen M SM   Siscovick David D   Soranzo Nicole N   Stöckl Doris D   Tworoger Shelley S   Uitterlinden André G AG   van Gils Carla H CH   Vasan Ramachandran S RS   Wichmann H-Erich HE   Zhai Guangju G   Bhasin Shalender S   Bidlingmaier Martin M   Chanock Stephen J SJ   De Vivo Immaculata I   Harris Tamara B TB   Hunter David J DJ   Kähönen Mika M   Liu Simin S   Ouyang Pamela P   Spector Tim D TD   van der Schouw Yvonne T YT   Viikari Jorma J   Wallaschofski Henri H   McCarthy Mark I MI   Frayling Timothy M TM   Murray Anna A   Franks Steve S   Järvelin Marjo-Riitta MR   de Jong Frank H FH   Raitakari Olli O   Teumer Alexander A   Ohlsson Claes C   Murabito Joanne M JM   Perry John R B JR  

PLoS genetics 20120719 7


Sex hormone-binding globulin (SHBG) is a glycoprotein responsible for the transport and biologic availability of sex steroid hormones, primarily testosterone and estradiol. SHBG has been associated with chronic diseases including type 2 diabetes (T2D) and with hormone-sensitive cancers such as breast and prostate cancer. We performed a genome-wide association study (GWAS) meta-analysis of 21,791 individuals from 10 epidemiologic studies and validated these findings in 7,046 individuals in an add  ...[more]

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