Unknown

Dataset Information

0

Multiplexed digital quantification of binge-like alcohol-mediated alterations in maternal uterine angiogenic mRNA transcriptome.


ABSTRACT: Genomic studies on fetal alcohol spectrum disorders (FASD) have utilized either genome-wide microarrays/bioinformatics or targeted real-time PCR (RT-PCR). We utilized herein for the first time a novel digital approach with high throughput as well as the capability to focus on one physiological system. The aim of the present study was to investigate alcohol-induced alterations in uterine angiogenesis-related mRNA abundance using digital mRNA technology. Four biological and three technical replicates of uterine arterial endothelial cells from third-trimester ewes were fluorescence-activated cell sorted, validated, and treated without or with binge-like alcohol. A capture probe covalently bound to an oligonucleotide containing biotin and a color-coded reporter probe were designed for 85 angiogenesis-related genes and analyzed with the Nanostring nCounter system. Twenty genes were downregulated (?) and two upregulated (?), including angiogenic growth factors/receptors (?placental growth factor), adhesion molecules (?angiopoietin-like-3; ?collagen-18A1; ?endoglin), proteases/matrix proteins/inhibitors (?alanyl aminopeptidase; ?collagen-4A3; ?heparanase; ?plasminogen, ?plasminogen activator urokinase; ?platelet factor-4; ?plexin domain containing-1; ?tissue inhibitor of metalloproteinases-3), transcription/signaling molecules (?heart and neural crest derivatives-2; ?DNA-binding protein inhibitor; ?NOTCH-4; ?ribosomal protein-L13a1; ?ribosomal protein large-P1), cytokines/chemokines (?interleukin-1B), and miscellaneous growth factors (?leptin; ?platelet-derived growth factor-?); ?transforming growth factor (TGF-?; ?TGF-? receptor-1). These novel data show significant detrimental alcohol effects on genes controlling angiogenesis supporting a mechanistic role for abnormal uteroplacental vascular development in FASD. The tripartite digital gene expression system is therefore a valuable tool to answer many additional questions about FASD from both mechanistic as well as ameliorative perspectives.

SUBMITTER: Ramadoss J 

PROVIDER: S-EPMC3426435 | biostudies-literature | 2012 Jun

REPOSITORIES: biostudies-literature

altmetric image

Publications

Multiplexed digital quantification of binge-like alcohol-mediated alterations in maternal uterine angiogenic mRNA transcriptome.

Ramadoss Jayanth J   Magness Ronald R RR  

Physiological genomics 20120424 11


Genomic studies on fetal alcohol spectrum disorders (FASD) have utilized either genome-wide microarrays/bioinformatics or targeted real-time PCR (RT-PCR). We utilized herein for the first time a novel digital approach with high throughput as well as the capability to focus on one physiological system. The aim of the present study was to investigate alcohol-induced alterations in uterine angiogenesis-related mRNA abundance using digital mRNA technology. Four biological and three technical replica  ...[more]

Similar Datasets

| S-EPMC6628922 | biostudies-literature
| S-EPMC3215828 | biostudies-literature
| S-EPMC3513571 | biostudies-literature
| S-EPMC5033901 | biostudies-literature
| S-EPMC3103428 | biostudies-literature
| S-EPMC7205333 | biostudies-literature
| S-EPMC6685952 | biostudies-literature
| S-EPMC5605662 | biostudies-literature
| S-EPMC8408869 | biostudies-literature
| S-EPMC4207670 | biostudies-literature