Ontology highlight
ABSTRACT:
SUBMITTER: Roberts I
PROVIDER: S-EPMC3449101 | biostudies-literature | 2012
REPOSITORIES: biostudies-literature
Roberts Ian I Carter Stephanie A SA Scarpini Cinzia G CG Karagavriilidou Konstantina K Barna Jenny C J JC Calleja Mark M Coleman Nicholas N
Advances in bioinformatics 20120913
Reliable identification of copy number aberrations (CNA) from comparative genomic hybridization data would be improved by the availability of a generalised method for processing large datasets. To this end, we developed swatCGH, a data analysis framework and region detection heuristic for computational grids. swatCGH analyses sequentially displaced (sliding) windows of neighbouring probes and applies adaptive thresholds of varying stringency to identify the 10% of each chromosome that contains t ...[more]