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CING: an integrated residue-based structure validation program suite.


ABSTRACT: We present a suite of programs, named CING for Common Interface for NMR Structure Generation that provides for a residue-based, integrated validation of the structural NMR ensemble in conjunction with the experimental restraints and other input data. External validation programs and new internal validation routines compare the NMR-derived models with empirical data, measured chemical shifts, distance- and dihedral restraints and the results are visualized in a dynamic Web 2.0 report. A red-orange-green score is used for residues and restraints to direct the user to those critiques that warrant further investigation. Overall green scores below ~20 % accompanied by red scores over ~50 % are strongly indicative of poorly modelled structures. The publically accessible, secure iCing webserver ( https://nmr.le.ac.uk ) allows individual users to upload the NMR data and run a CING validation analysis.

SUBMITTER: Doreleijers JF 

PROVIDER: S-EPMC3483101 | biostudies-literature | 2012 Nov

REPOSITORIES: biostudies-literature

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CING: an integrated residue-based structure validation program suite.

Doreleijers Jurgen F JF   Sousa da Silva Alan W AW   Krieger Elmar E   Nabuurs Sander B SB   Spronk Christian A E M CA   Stevens Tim J TJ   Vranken Wim F WF   Vriend Gert G   Vuister Geerten W GW  

Journal of biomolecular NMR 20120918 3


We present a suite of programs, named CING for Common Interface for NMR Structure Generation that provides for a residue-based, integrated validation of the structural NMR ensemble in conjunction with the experimental restraints and other input data. External validation programs and new internal validation routines compare the NMR-derived models with empirical data, measured chemical shifts, distance- and dihedral restraints and the results are visualized in a dynamic Web 2.0 report. A red-orang  ...[more]

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