Dataset Information

Hidden genetic diversity in the green alga Spirogyra (Zygnematophyceae, Streptophyta).

ABSTRACT:

Background

The unbranched filamentous green alga Spirogyra (Streptophyta, Zygnemataceae) is easily recognizable based on its vegetative morphology, which shows one to several spiral chloroplasts. This simple structure falsely points to a low genetic diversity: Spirogyra is commonly excluded from phylogenetic analyses because the genus is known as a long-branch taxon caused by a high evolutionary rate.

Results

We focused on this genetic diversity and sequenced 130 Spirogyra small subunit nuclear ribosomal DNA (SSU rDNA) strands of different origin. The resulting SSU rDNA sequences were used for phylogenetic analyses using complex evolutionary models (posterior probability, maximum likelihood, neighbor joining, and maximum parsimony methods). The sequences were between 1672 and 1779 nucleotides long. Sequence comparisons revealed 53 individual clones, but our results still support monophyly of the genus. Our data set did not contain a single slow-evolving taxon that would have been placed on a shorter branch compared to the remaining sequences. Out of 130 accessions analyzed, 72 showed a secondary loss of the 1506 group I intron, which formed a long-branched group within the genus. The phylogenetic relationship to the genus Spirotaenia was not resolved satisfactorily. The genetic distance within the genus Spirogyra exceeded the distances measured within any other genus of the remaining Zygnemataceae included in this study.

Conclusion

Overall, we define eight distinct clades of Spirogyra, one of them including the genus Sirogonium. A large number of non-homoplasious synapomorphies (NHS; 114 NHS in total) was found for Spirogyra (41 NHS) and for each clade (totaling 73 NHS). This emphasizes the high genetic diversity of this genus and the distance to the remaining Zygnematophyceae.

SUBMITTER: Chen C

PROVIDER: S-EPMC3527229 | biostudies-literature | 2012 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Hidden genetic diversity in the green alga Spirogyra (Zygnematophyceae, Streptophyta).

Chen Charlotte C Barfuss Michael H J MH Pröschold Thomas T Schagerl Michael M

BMC evolutionary biology 20120601

<h4>Background</h4>The unbranched filamentous green alga Spirogyra (Streptophyta, Zygnemataceae) is easily recognizable based on its vegetative morphology, which shows one to several spiral chloroplasts. This simple structure falsely points to a low genetic diversity: Spirogyra is commonly excluded from phylogenetic analyses because the genus is known as a long-branch taxon caused by a high evolutionary rate.<h4>Results</h4>We focused on this genetic diversity and sequenced 130 Spirogyra small s ...[more]

PMID: 22655677

Similar Datasets

Project description:The osmotic potential and effects of plasmolysis on photosynthetic oxygen evolution and chlorophyll fluorescence were studied in two Arctic Zygnema sp. (strain B, strain G) and two Antarctic Zygnema sp. (strain E, strain D). Antarctic strain D was newly characterized by rbcL sequence analysis in the present study. The two Antarctic strains, D and E, are most closely related and may represent different isolates of the same species, in contrast, strain B and G are separate lineages. Incipient plasmolysis in the cells was determined by light microscopy after incubating cells in sorbitol solutions ranging between 200 mM and 1000 mM sorbitol for 3, 6 and 24h. In Zygnema strain B and G incipient plasmolysis occurred at ~600 mM sorbitol solution (720 mOsmol kg(-1), ?=-1.67 MPa) and in strains D and E at ~300 mM (318 mOsmol kg(-1), ?=-0.8 MPa) sorbitol solution. Hechtian strands were visualized in all plasmolysed cells, which is particularly interesting, as these cells lack pores or plasmodesmata. Ultrastructural changes upon osmotic stress were a retraction of the condensed cytoplasm from the cell walls, damages to chloroplast and mitochondrial membranes, increasing numbers of plastoglobules in the chloroplasts and membrane enclosed particles in the extraplasmatic space. Maximum photosynthetic rates (P(max)) in light saturated range were between 145.5 ?mol O(2) h(-1)mg(-1)Chl a in Zygnema G and 752.9 ?mol O(2) h(-1)mg(-1)Chl a in Zygnema E. After incubation in 800 mM sorbitol for 3h P(max) decreased to the following percentage of the initial values: B: 16.3%, D: 16.8%, E: 26.1% and G: 35.0%. Osmotic stress (800 mM sorbitol) decreased maximum photochemical quantum yield of photosystem II (F(v)/F(m)) when compared to controls. Maximum values of relative electron transport rates of photosystem II (rETR(max)) decreased after incubation in 400 mM sorbitol in Zygnema D and E, while they decreased in Zygnema B and G only after incubation in 800 mM sorbitol. The kinetics of the rETR curves were similar for the Arctic strains Zygnema B and G, but distinct from the Antarctic strains Zygnema D and E, which were similar when compared with each other. This suggests that the investigated Arctic Zygnema sp. strains might be better adapted to tolerate osmotic water stress than the investigated strains from the Antarctic.

Dataset Information

Hidden genetic diversity in the green alga Spirogyra (Zygnematophyceae, Streptophyta).

Background

Results

Conclusion

Publications

Hidden genetic diversity in the green alga Spirogyra (Zygnematophyceae, Streptophyta).

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets