EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes.
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ABSTRACT:
SUBMITTER: Magoc T
PROVIDER: S-EPMC3603529 | biostudies-literature | 2013
REPOSITORIES: biostudies-literature
Publications
EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes.
Magoc Tanja T Wood Derrick D Salzberg Steven L SL
Evolutionary bioinformatics online 20130310
<h4>Background</h4>The expression levels of bacterial genes can be measured directly using next-generation sequencing (NGS) methods, offering much greater sensitivity and accuracy than earlier, microarray-based methods. Most bioinformatics software for estimating levels of gene expression from NGS data has been designed for eukaryotic genomes, with algorithms focusing particularly on detection of splicing patterns. These methods do not perform well on bacterial genomes.<h4>Results</h4>Here we de ...[more]
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