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PI²PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics.

ABSTRACT: PI²PE (http://pipe.sc.fsu.edu) is a suite of four web servers for predicting a variety of folding- and binding-related properties of proteins. These include the solvent accessibility of amino acids upon protein folding, the amino acids forming the interfaces of protein-protein and protein-nucleic acid complexes, and the binding rate constants of these complexes. Three of the servers debuted in 2007, and have garnered ~2,500 unique users and finished over 30,000 jobs. The functionalities of these servers are now enhanced, and a new sever, for predicting the binding rate constants, is added. Together, these web servers form a pipeline from protein sequence to tertiary structure, then to quaternary structure, and finally to binding kinetics.

SUBMITTER: Qin S

PROVIDER: S-EPMC3605041 | biostudies-literature | 2013 Mar

REPOSITORIES: biostudies-literature

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PI<sup>2</sup>PE: A Suite of Web Servers for Predictions Ranging From Protein Structure to Binding Kinetics.

Qin Sanbo S Zhou Huan-Xiang HX

Biophysical reviews 20120725 1

PI<sup>2</sup>PE (http://pipe.sc.fsu.edu) is a suite of four web servers for predicting a variety of folding- and binding-related properties of proteins. These include the solvent accessibility of amino acids upon protein folding, the amino acids forming the interfaces of protein-protein and protein-nucleic acid complexes, and the binding rate constants of these complexes. Three of the servers debuted in 2007, and have garnered ~2,500 unique users and finished over 30,000 jobs. The functionaliti ...[more]

PMID: 23526172

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