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Allosteric transitions in biological nanomachines are described by robust normal modes of elastic networks.

ABSTRACT: Allostery forms the basis of intra-molecular communications in various enzymes, however the underlying conformational changes are largely elusive. Recently, we have proposed to employ an elastic model based normal mode analysis to investigate the allosteric transitions in several molecular nanomachines (including myosin II, DNA polymerase and chaperonin GroEL). After combining with bioinformatics analysis of the evolutionary sequence variations, we have been able to identify the highly conserved and robust modes of collective motions that are capable of transmitting molecular signals over long distances.

SUBMITTER: Zheng W

PROVIDER: S-EPMC3610319 | biostudies-literature | 2009 Apr

REPOSITORIES: biostudies-literature

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Allosteric transitions in biological nanomachines are described by robust normal modes of elastic networks.

Zheng Wenjun W Brooks Bernard R BR Thirumalai D D

Current protein & peptide science 20090401 2

Allostery forms the basis of intra-molecular communications in various enzymes, however the underlying conformational changes are largely elusive. Recently, we have proposed to employ an elastic model based normal mode analysis to investigate the allosteric transitions in several molecular nanomachines (including myosin II, DNA polymerase and chaperonin GroEL). After combining with bioinformatics analysis of the evolutionary sequence variations, we have been able to identify the highly conserved ...[more]

PMID: 19355980

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