Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes.
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ABSTRACT:
SUBMITTER: Rashid M
PROVIDER: S-EPMC3740632 | biostudies-literature | 2013 Sep
REPOSITORIES: biostudies-literature
Publications
Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes.
Rashid Mamunur M Robles-Espinoza Carla Daniela CD Rust Alistair G AG Adams David J DJ
Bioinformatics (Oxford, England) 20130625 17
We have developed Cake, a bioinformatics software pipeline that integrates four publicly available somatic variant-calling algorithms to identify single nucleotide variants with higher sensitivity and accuracy than any one algorithm alone. Cake can be run on a high-performance computer cluster or used as a stand-alone application. Availabilty: Cake is open-source and is available from http://cakesomatic.sourceforge.net/ ...[more]
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